本文整理了Java中uk.ac.ebi.intact.model.util.XrefUtils.getIdentityXref()方法的一些代码示例，展示了XrefUtils.getIdentityXref()的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台，是从一些精选项目中提取出来的代码，具有较强的参考意义，能在一定程度帮忙到你。XrefUtils.getIdentityXref()方法的具体详情如下：
包路径：uk.ac.ebi.intact.model.util.XrefUtils
类名称：XrefUtils
方法名：getIdentityXref

XrefUtils.getIdentityXref介绍

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代码示例

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

public static <X extends Xref> X getIdentityXref(AnnotatedObject<X, ?> annotatedObject, CvDatabase cvDatabase) {
  String dbMi = cvDatabase.getIdentifier();
  return getIdentityXref(annotatedObject, dbMi);
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

/**
 * Gets the unique identifier of a CvObject. If it has PSI MI Identifier (miIdentifier) return it,
 * if not, return the 'CvDatabase.intact' identifier; otherwise return the primaryId of the first identity xref found.
 *
 * @param cvObject The object to get the identifier from.
 * @return The identifier. Will be null if no miIdentifier or identity xref is found.
 * @since 1.8.0
 */
public static String getIdentity(CvObject cvObject) {
  if (cvObject == null) return null;
  // try the PSI MI first
  if (cvObject.getIdentifier() != null) {
    return cvObject.getIdentifier();
  }
  // try to get the identity with CvDatabase 'intact'
  CvObjectXref idXref = XrefUtils.getIdentityXref(cvObject, CvDatabase.INTACT);
  // get the first identity, if any
  if (idXref == null) {
    Collection<CvObjectXref> idXrefs = XrefUtils.getIdentityXrefs(cvObject);
    if (!idXrefs.isEmpty()) {
      idXref = idXrefs.iterator().next();
    }
  }
  return (idXref != null) ? idXref.getPrimaryId() : null;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

/**
 * Gets the unique identifier of a CvObject. If it has PSI MI Identifier (miIdentifier) return it,
 * if not, return the 'CvDatabase.intact' identifier; otherwise return the primaryId of the first identity xref found.
 *
 * @param cvObject The object to get the identifier from.
 * @return The identifier. Will be null if no miIdentifier or identity xref is found.
 * @since 1.8.0
 */
public static String getIdentity(CvObject cvObject) {
  if (cvObject == null) return null;
  // try the PSI MI first
  if (cvObject.getIdentifier() != null) {
    return cvObject.getIdentifier();
  }
  // try to get the identity with CvDatabase 'intact'
  CvObjectXref idXref = XrefUtils.getIdentityXref(cvObject, CvDatabase.INTACT);
  // get the first identity, if any
  if (idXref == null) {
    Collection<CvObjectXref> idXrefs = XrefUtils.getIdentityXrefs(cvObject);
    if (!idXrefs.isEmpty()) {
      idXref = idXrefs.iterator().next();
    }
  }
  return (idXref != null) ? idXref.getPrimaryId() : null;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

public static <X extends Xref> X getIdentityXref(AnnotatedObject<X, ?> annotatedObject, CvDatabase cvDatabase) {
  String dbMi = cvDatabase.getIdentifier();
  return getIdentityXref(annotatedObject, dbMi);
}

代码示例来源：origin: uk.ac.ebi.intact.dbupdate/intact-cv-update

private void initializeIdentityValue(IntactOntologyAccess ontologyAccess){
  CvObjectXref currentIdentityXref = XrefUtils.getIdentityXref(currentIntactParent, ontologyAccess.getDatabaseIdentifier());
  // this parent cannot be updated because is not from the same ontology
  if (currentIdentityXref == null && ontologyAccess.getDatabaseRegexp() != null){
    Matcher matcher = ontologyAccess.getDatabaseRegexp().matcher(currentIntactParent.getIdentifier());
    if (matcher.find() && matcher.group().equalsIgnoreCase(currentIntactParent.getIdentifier())){
      currentIdentity = currentIntactParent.getIdentifier();
    }
    else {
      currentIdentity = null;
    }
  }
  else {
    currentIdentity = currentIdentityXref.getPrimaryId();
  }
}

代码示例来源：origin: uk.ac.ebi.intact.dbupdate/intact-cv-update

private void initializeIdentityValue(IntactOntologyAccess ontologyAccess){
  CvObjectXref currentIdentityXref = XrefUtils.getIdentityXref(currentIntactParent, ontologyAccess.getDatabaseIdentifier());
  // this parent cannot be updated because is not from the same ontology
  if (currentIdentityXref == null && ontologyAccess.getDatabaseRegexp() != null){
    Matcher matcher = ontologyAccess.getDatabaseRegexp().matcher(currentIntactParent.getIdentifier());
    if (matcher.find() && matcher.group().equalsIgnoreCase(currentIntactParent.getIdentifier())){
      currentIdentity = currentIntactParent.getIdentifier();
    }
    else {
      currentIdentity = null;
    }
  }
  else {
    currentIdentity = currentIdentityXref.getPrimaryId();
  }
}

代码示例来源：origin: uk.ac.ebi.intact.dbupdate/intact-cv-update

CvObjectXref identity1 = XrefUtils.getIdentityXref(o1, dbIdentifier);
CvObjectXref identity2 = XrefUtils.getIdentityXref(o2, dbIdentifier);

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

InteractorXref idPdbXref = XrefUtils.getIdentityXref(interaction, CvDatabase.RCSB_PDB_MI_REF);
InteractorXref idMsdXref = XrefUtils.getIdentityXref(interaction, CvDatabase.MSD_PDB_MI_REF);
InteractorXref idWwXref = XrefUtils.getIdentityXref(interaction, CvDatabase.WWPDB_MI_REF);
if (idPdbXref != null) sb.append(idPdbXref.getPrimaryId());
if (idMsdXref != null) sb.append(idMsdXref.getPrimaryId());

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

InteractorXref idPdbXref = XrefUtils.getIdentityXref(interaction, CvDatabase.RCSB_PDB_MI_REF);
InteractorXref idMsdXref = XrefUtils.getIdentityXref(interaction, CvDatabase.MSD_PDB_MI_REF);
InteractorXref idWwXref = XrefUtils.getIdentityXref(interaction, CvDatabase.WWPDB_MI_REF);
if (idPdbXref != null) sb.append(idPdbXref.getPrimaryId());
if (idMsdXref != null) sb.append(idMsdXref.getPrimaryId());