org.obolibrary.oboformat.model.Xref.getAnnotation()方法的使用及代码示例-6ren

org.obolibrary.oboformat.model.Xref.getAnnotation()方法的使用及代码示例

转载作者：知者更新时间：2024-03-19 08:26:40

本文整理了Java中org.obolibrary.oboformat.model.Xref.getAnnotation()方法的一些代码示例，展示了Xref.getAnnotation()的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台，是从一些精选项目中提取出来的代码，具有较强的参考意义，能在一定程度帮忙到你。Xref.getAnnotation()方法的具体详情如下：
包路径：org.obolibrary.oboformat.model.Xref
类名称：Xref
方法名：getAnnotation

Xref.getAnnotation介绍

暂无

代码示例

代码示例来源：origin: owlcs/owlapi

/**
 * @param obj the obj
 * @return toString representation
 */
private static String toStringRepresentation(@Nullable Object obj) {
  if (obj == null) {
    return "";
  }
  if (obj instanceof Xref) {
    Xref xref = (Xref) obj;
    return xref.getIdref() + ' ' + xref.getAnnotation();
  }
  if (obj instanceof String) {
    return (String) obj;
  }
  return obj.toString();
}

代码示例来源：origin: net.sourceforge.owlapi/owlapi-distribution

/**
 * @param obj the obj
 * @return toString representation
 */
private static String toStringRepresentation(@Nullable Object obj) {
  if (obj == null) {
    return "";
  }
  if (obj instanceof Xref) {
    Xref xref = (Xref) obj;
    return xref.getIdref() + ' ' + xref.getAnnotation();
  }
  if (obj instanceof String) {
    return (String) obj;
  }
  return obj.toString();
}

代码示例来源：origin: net.sourceforge.owlapi/owlapi-osgidistribution

/**
 * @param obj the obj
 * @return toString representation
 */
private static String toStringRepresentation(@Nullable Object obj) {
  if (obj == null) {
    return "";
  }
  if (obj instanceof Xref) {
    Xref xref = (Xref) obj;
    return xref.getIdref() + ' ' + xref.getAnnotation();
  }
  if (obj instanceof String) {
    return (String) obj;
  }
  return obj.toString();
}

代码示例来源：origin: net.sourceforge.owlapi/oboformat-included-owlapi

private String toStringRepresentation(Object obj) {
    String s = null;
    if (obj != null) {
      if (obj instanceof Xref) {
        Xref xref = (Xref) obj;
        s = xref.getIdref()+" "+xref.getAnnotation();
      }
      else if (obj instanceof String) {
        s = (String) obj;
      }
      else {
        s = obj.toString();
      }
    }
    return s;
  }
}

代码示例来源：origin: net.sourceforge.owlapi/owlapi-oboformat

/**
 * @param obj the obj
 * @return toString representation
 */
private static String toStringRepresentation(@Nullable Object obj) {
  if (obj == null) {
    return "";
  }
  if (obj instanceof Xref) {
    Xref xref = (Xref) obj;
    return xref.getIdref() + ' ' + xref.getAnnotation();
  }
  if (obj instanceof String) {
    return (String) obj;
  }
  return obj.toString();
}

代码示例来源：origin: owlcs/owlapi

private static void appendXrefs(StringBuilder sb, Collection<Xref> xrefs) {
  List<Xref> sortedXrefs = new ArrayList<>(xrefs);
  Collections.sort(sortedXrefs, XrefComparator.INSTANCE);
  sb.append(" [");
  Iterator<Xref> xrefsIterator = sortedXrefs.iterator();
  while (xrefsIterator.hasNext()) {
    Xref current = xrefsIterator.next();
    String idref = current.getIdref();
    int colonPos = idref.indexOf(':');
    if (colonPos > 0) {
      sb.append(escapeOboString(idref.substring(0, colonPos), EscapeMode.XREFLIST));
      sb.append(':');
      sb.append(escapeOboString(idref.substring(colonPos + 1), EscapeMode.XREFLIST));
    } else {
      sb.append(escapeOboString(idref, EscapeMode.XREFLIST));
    }
    String annotation = current.getAnnotation();
    if (annotation != null) {
      sb.append(' ');
      sb.append('"');
      sb.append(escapeOboString(annotation, EscapeMode.QUOTES));
      sb.append('"');
    }
    if (xrefsIterator.hasNext()) {
      sb.append(", ");
    }
  }
  sb.append(']');
}

代码示例来源：origin: net.sourceforge.owlapi/owlapi-distribution

private static void appendXrefs(StringBuilder sb, Collection<Xref> xrefs) {
  List<Xref> sortedXrefs = new ArrayList<>(xrefs);
  Collections.sort(sortedXrefs, XrefComparator.INSTANCE);
  sb.append(" [");
  Iterator<Xref> xrefsIterator = sortedXrefs.iterator();
  while (xrefsIterator.hasNext()) {
    Xref current = xrefsIterator.next();
    String idref = current.getIdref();
    int colonPos = idref.indexOf(':');
    if (colonPos > 0) {
      sb.append(escapeOboString(idref.substring(0, colonPos), EscapeMode.XREFLIST));
      sb.append(':');
      sb.append(escapeOboString(idref.substring(colonPos + 1), EscapeMode.XREFLIST));
    } else {
      sb.append(escapeOboString(idref, EscapeMode.XREFLIST));
    }
    String annotation = current.getAnnotation();
    if (annotation != null) {
      sb.append(' ');
      sb.append('"');
      sb.append(escapeOboString(annotation, EscapeMode.QUOTES));
      sb.append('"');
    }
    if (xrefsIterator.hasNext()) {
      sb.append(", ");
    }
  }
  sb.append(']');
}

代码示例来源：origin: net.sourceforge.owlapi/owlapi-oboformat

private static void appendXrefs(StringBuilder sb, Collection<Xref> xrefs) {
  List<Xref> sortedXrefs = new ArrayList<>(xrefs);
  Collections.sort(sortedXrefs, XrefComparator.INSTANCE);
  sb.append(" [");
  Iterator<Xref> xrefsIterator = sortedXrefs.iterator();
  while (xrefsIterator.hasNext()) {
    Xref current = xrefsIterator.next();
    String idref = current.getIdref();
    int colonPos = idref.indexOf(':');
    if (colonPos > 0) {
      sb.append(escapeOboString(idref.substring(0, colonPos), EscapeMode.XREFLIST));
      sb.append(':');
      sb.append(escapeOboString(idref.substring(colonPos + 1), EscapeMode.XREFLIST));
    } else {
      sb.append(escapeOboString(idref, EscapeMode.XREFLIST));
    }
    String annotation = current.getAnnotation();
    if (annotation != null) {
      sb.append(' ');
      sb.append('"');
      sb.append(escapeOboString(annotation, EscapeMode.QUOTES));
      sb.append('"');
    }
    if (xrefsIterator.hasNext()) {
      sb.append(", ");
    }
  }
  sb.append(']');
}

代码示例来源：origin: net.sourceforge.owlapi/oboformat-included-owlapi

private void appendXrefs(StringBuilder sb, Collection<Xref> xrefs) {
  List<Xref> sortedXrefs = new ArrayList<Xref>(xrefs);
  Collections.sort(sortedXrefs, XrefComparator.instance);
  sb.append(" [");
  Iterator<Xref> xrefsIterator = sortedXrefs.iterator();
  while (xrefsIterator.hasNext()) {
    final Xref current = xrefsIterator.next();
    String idref = current.getIdref();
    int colonPos = idref.indexOf(':');
    if (colonPos > 0) {
      sb.append(escapeOboString(idref.substring(0, colonPos), EscapeMode.xrefList));
      sb.append(':');
      sb.append(escapeOboString(idref.substring(colonPos + 1), EscapeMode.xrefList));
    }
    else {
      sb.append(escapeOboString(idref, EscapeMode.xrefList));
    }
    String annotation = current.getAnnotation();
    if (annotation != null) {
      sb.append(' ');
      sb.append('"');
      sb.append(escapeOboString(annotation, EscapeMode.quotes));
      sb.append('"');
    }
    if (xrefsIterator.hasNext()) {
      sb.append(", ");
    }
  }
  sb.append("]");
}

代码示例来源：origin: net.sourceforge.owlapi/owlapi-osgidistribution

private static void appendXrefs(StringBuilder sb, Collection<Xref> xrefs) {
  List<Xref> sortedXrefs = new ArrayList<>(xrefs);
  Collections.sort(sortedXrefs, XrefComparator.INSTANCE);
  sb.append(" [");
  Iterator<Xref> xrefsIterator = sortedXrefs.iterator();
  while (xrefsIterator.hasNext()) {
    Xref current = xrefsIterator.next();
    String idref = current.getIdref();
    int colonPos = idref.indexOf(':');
    if (colonPos > 0) {
      sb.append(escapeOboString(idref.substring(0, colonPos), EscapeMode.XREFLIST));
      sb.append(':');
      sb.append(escapeOboString(idref.substring(colonPos + 1), EscapeMode.XREFLIST));
    } else {
      sb.append(escapeOboString(idref, EscapeMode.XREFLIST));
    }
    String annotation = current.getAnnotation();
    if (annotation != null) {
      sb.append(' ');
      sb.append('"');
      sb.append(escapeOboString(annotation, EscapeMode.QUOTES));
      sb.append('"');
    }
    if (xrefsIterator.hasNext()) {
      sb.append(", ");
    }
  }
  sb.append(']');
}

代码示例来源：origin: owlcs/owlapi

private static void writeXRefClause(Clause clause, Writer writer) throws IOException {
  Xref xref = clause.getValue(Xref.class);
  StringBuilder sb = new StringBuilder();
  sb.append(clause.getTag());
  sb.append(": ");
  String idref = xref.getIdref();
  int colonPos = idref.indexOf(':');
  if (colonPos > 0) {
    sb.append(escapeOboString(idref.substring(0, colonPos), EscapeMode.XREF));
    sb.append(':');
    sb.append(escapeOboString(idref.substring(colonPos + 1), EscapeMode.XREF));
  } else {
    sb.append(escapeOboString(idref, EscapeMode.XREF));
  }
  String annotation = xref.getAnnotation();
  if (annotation != null) {
    sb.append(" \"");
    sb.append(escapeOboString(annotation, EscapeMode.QUOTES));
    sb.append('"');
  }
  appendQualifiers(sb, clause);
  writeLine(sb, writer);
}

代码示例来源：origin: net.sourceforge.owlapi/owlapi-distribution

private static void writeXRefClause(Clause clause, Writer writer) throws IOException {
  Xref xref = clause.getValue(Xref.class);
  StringBuilder sb = new StringBuilder();
  sb.append(clause.getTag());
  sb.append(": ");
  String idref = xref.getIdref();
  int colonPos = idref.indexOf(':');
  if (colonPos > 0) {
    sb.append(escapeOboString(idref.substring(0, colonPos), EscapeMode.XREF));
    sb.append(':');
    sb.append(escapeOboString(idref.substring(colonPos + 1), EscapeMode.XREF));
  } else {
    sb.append(escapeOboString(idref, EscapeMode.XREF));
  }
  String annotation = xref.getAnnotation();
  if (annotation != null) {
    sb.append(" \"");
    sb.append(escapeOboString(annotation, EscapeMode.QUOTES));
    sb.append('"');
  }
  appendQualifiers(sb, clause);
  writeLine(sb, writer);
}

代码示例来源：origin: net.sourceforge.owlapi/owlapi-osgidistribution

private static void writeXRefClause(Clause clause, Writer writer) throws IOException {
  Xref xref = clause.getValue(Xref.class);
  StringBuilder sb = new StringBuilder();
  sb.append(clause.getTag());
  sb.append(": ");
  String idref = xref.getIdref();
  int colonPos = idref.indexOf(':');
  if (colonPos > 0) {
    sb.append(escapeOboString(idref.substring(0, colonPos), EscapeMode.XREF));
    sb.append(':');
    sb.append(escapeOboString(idref.substring(colonPos + 1), EscapeMode.XREF));
  } else {
    sb.append(escapeOboString(idref, EscapeMode.XREF));
  }
  String annotation = xref.getAnnotation();
  if (annotation != null) {
    sb.append(" \"");
    sb.append(escapeOboString(annotation, EscapeMode.QUOTES));
    sb.append('"');
  }
  appendQualifiers(sb, clause);
  writeLine(sb, writer);
}

代码示例来源：origin: net.sourceforge.owlapi/owlapi-oboformat

private static void writeXRefClause(Clause clause, Writer writer) throws IOException {
  Xref xref = clause.getValue(Xref.class);
  StringBuilder sb = new StringBuilder();
  sb.append(clause.getTag());
  sb.append(": ");
  String idref = xref.getIdref();
  int colonPos = idref.indexOf(':');
  if (colonPos > 0) {
    sb.append(escapeOboString(idref.substring(0, colonPos), EscapeMode.XREF));
    sb.append(':');
    sb.append(escapeOboString(idref.substring(colonPos + 1), EscapeMode.XREF));
  } else {
    sb.append(escapeOboString(idref, EscapeMode.XREF));
  }
  String annotation = xref.getAnnotation();
  if (annotation != null) {
    sb.append(" \"");
    sb.append(escapeOboString(annotation, EscapeMode.QUOTES));
    sb.append('"');
  }
  appendQualifiers(sb, clause);
  writeLine(sb, writer);
}

代码示例来源：origin: net.sourceforge.owlapi/oboformat-included-owlapi

private void writeXRefClause(Clause clause, BufferedWriter writer) throws IOException {
  Xref xref = clause.getValue(Xref.class);
  if (xref != null) {
    StringBuilder sb = new StringBuilder();
    sb.append(clause.getTag());
    sb.append(": ");
    if (xref.getIdref() != null) {
      String idref = xref.getIdref();
      int colonPos = idref.indexOf(':');
      if (colonPos > 0) {
        sb.append(escapeOboString(idref.substring(0, colonPos), EscapeMode.xref));
        sb.append(':');
        sb.append(escapeOboString(idref.substring(colonPos + 1), EscapeMode.xref));
      }
      else {
        sb.append(escapeOboString(idref, EscapeMode.xref));
      }
      String annotation = xref.getAnnotation();
      if (annotation != null) {
        sb.append(" \"");
        sb.append(escapeOboString(annotation, EscapeMode.quotes));
        sb.append('"');
      }
    }
    appendQualifiers(sb, clause);
    writeLine(sb, writer);
  }
}

代码示例来源：origin: owlcs/owlapi

private static List<Diff> getDiffsAsym(String ftype, Frame f1, Frame f2, int n) {
  List<Diff> diffs = new ArrayList<>();
  for (Clause c : f1.getClauses()) {
    boolean isMatched = false;
    for (Clause c2 : f2.getClauses()) {
      if (sameTag(c, c2)) {
        if (c.equals(c2)) {
          isMatched = true;
          if (OboFormatTag.TAG_XREF.getTag().equals(c.getTag())) {
            String a1 = c.getValue(Xref.class).getAnnotation();
            String a2 = c2.getValue(Xref.class).getAnnotation();
            isMatched = a1 == null && a2 == null || a1 != null && a1.equals(a2);
          }
          break;
        }
      }
    }
    if (!isMatched) {
      diffs.add(new Diff(ftype, "cannot_match_clause", f1, f2, c, n));
    }
  }
  return diffs;
}

代码示例来源：origin: net.sourceforge.owlapi/owlapi-osgidistribution

private static List<Diff> getDiffsAsym(String ftype, Frame f1, Frame f2, int n) {
  List<Diff> diffs = new ArrayList<>();
  for (Clause c : f1.getClauses()) {
    boolean isMatched = false;
    for (Clause c2 : f2.getClauses()) {
      if (sameTag(c, c2)) {
        if (c.equals(c2)) {
          isMatched = true;
          if (OboFormatTag.TAG_XREF.getTag().equals(c.getTag())) {
            String a1 = c.getValue(Xref.class).getAnnotation();
            String a2 = c2.getValue(Xref.class).getAnnotation();
            isMatched = a1 == null && a2 == null || a1 != null && a1.equals(a2);
          }
          break;
        }
      }
    }
    if (!isMatched) {
      diffs.add(new Diff(ftype, "cannot_match_clause", f1, f2, c, n));
    }
  }
  return diffs;
}

代码示例来源：origin: net.sourceforge.owlapi/owlapi-oboformat

private static List<Diff> getDiffsAsym(String ftype, Frame f1, Frame f2, int n) {
  List<Diff> diffs = new ArrayList<>();
  for (Clause c : f1.getClauses()) {
    boolean isMatched = false;
    for (Clause c2 : f2.getClauses()) {
      if (sameTag(c, c2)) {
        if (c.equals(c2)) {
          isMatched = true;
          if (OboFormatTag.TAG_XREF.getTag().equals(c.getTag())) {
            String a1 = c.getValue(Xref.class).getAnnotation();
            String a2 = c2.getValue(Xref.class).getAnnotation();
            isMatched = a1 == null && a2 == null || a1 != null && a1.equals(a2);
          }
          break;
        }
      }
    }
    if (!isMatched) {
      diffs.add(new Diff(ftype, "cannot_match_clause", f1, f2, c, n));
    }
  }
  return diffs;
}

代码示例来源：origin: net.sourceforge.owlapi/owlapi-distribution

private static List<Diff> getDiffsAsym(String ftype, Frame f1, Frame f2, int n) {
  List<Diff> diffs = new ArrayList<>();
  for (Clause c : f1.getClauses()) {
    boolean isMatched = false;
    for (Clause c2 : f2.getClauses()) {
      if (sameTag(c, c2)) {
        if (c.equals(c2)) {
          isMatched = true;
          if (OboFormatTag.TAG_XREF.getTag().equals(c.getTag())) {
            String a1 = c.getValue(Xref.class).getAnnotation();
            String a2 = c2.getValue(Xref.class).getAnnotation();
            isMatched = a1 == null && a2 == null || a1 != null && a1.equals(a2);
          }
          break;
        }
      }
    }
    if (!isMatched) {
      diffs.add(new Diff(ftype, "cannot_match_clause", f1, f2, c, n));
    }
  }
  return diffs;
}

代码示例来源：origin: net.sourceforge.owlapi/oboformat-included-owlapi

private List<Diff> getDiffsAsym(String ftype, Frame f1,
    Frame f2, int n) {
  List<Diff> diffs = new ArrayList<Diff>();
  for (Clause c : f1.getClauses()) {
    boolean isMatched = false;
    for (Clause c2 : f2.getClauses()) {
      if (c.getTag().equals(c2.getTag())) {
        if (c.equals(c2)) {
          isMatched = true;
          if (OboFormatTag.TAG_XREF.getTag().equals(c.getTag())) {
            String a1 = c.getValue(Xref.class).getAnnotation();
            String a2 = c2.getValue(Xref.class).getAnnotation();
            if (a1 != a2) {
              isMatched = false;
              if (a1 != null && a2 != null) {
                isMatched = a1.equals(a2);
              }
            }
          }
          break;
        }
      }
    }
    if (!isMatched) {
      diffs.add(new Diff(ftype, "cannot_match_clause", f1, f2, c, n));
    }
  }
  return diffs;
}

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org.obolibrary.oboformat.model.Xref.getAnnotation()方法的使用及代码示例

Xref.getAnnotation介绍

代码示例