r - Kruskal - 带有 R 的数据子集的 Wallis p 值矩阵

Question

考虑一个数据集 Data它有几个因子和几个数值连续变量。其中一些变量，比方说 slice_by_1 (带有“男性”、“女性”类)和 slice_by_2 (带有“悲伤”、“中性”、“快乐”类)，用于将数据“切片”为子集。对于每个子集，Kruskal-Wallis 测试都应该在变量上运行 length , preasure , pulse每个都由另一个名为 compare_by 的因子变量分组. R 中是否有一种快速方法来完成此任务并将计算出的 p 值放入矩阵？

我用过 dplyr包准备数据。

样本数据集:

library(dplyr)
set.seed(123)
Data <- tbl_df(
   data.frame(
       slice_by_1 = as.factor(rep(c("Male", "Female"), times = 120)),
       slice_by_2 = as.factor(rep(c("Happy", "Neutral", "Sad"), each = 80)),
       compare_by = as.factor(rep(c("blue", "green", "brown"), times = 80)),
       length   = c(sample(1:10, 120, replace=T), sample(5:12, 120, replace=T)),
       pulse    = runif(240, 60, 120),
       preasure = c(rnorm(80,1,2),rnorm(80,1,2.1),rnorm(80,1,3))
   )
   ) %>%
group_by(slice_by_1, slice_by_2)

我们看数据:

Source: local data frame [240 x 6]
Groups: slice_by_1, slice_by_2

   slice_by_1 slice_by_2 compare_by length     pulse     preasure
1        Male      Happy       blue     10  69.23376  0.508694601
2      Female      Happy      green      1  68.57866 -1.155632020
3        Male      Happy      brown      8 112.72132  0.007031799
4      Female      Happy       blue      3 116.61283  0.383769524
5        Male      Happy      green      7 110.06851 -0.717791526
6      Female      Happy      brown      8 117.62481  2.938658488
7        Male      Happy       blue      9 105.59749  0.735831389
8      Female      Happy      green      2  83.44101  3.881268679
9        Male      Happy      brown      5 101.48334  0.025572561
10     Female      Happy       blue     10  62.87331 -0.715108893
..        ...        ...        ...    ...       ...          ...

所需输出的示例:

    Data_subsets    length  preasure     pulse
1     Male_Happy <p-value> <p-value> <p-value>
2   Female_Happy <p-value> <p-value> <p-value>
3   Male_Neutral <p-value> <p-value> <p-value>
4 Female_Neutral <p-value> <p-value> <p-value>
5       Male_Sad <p-value> <p-value> <p-value>
6     Female_Sad <p-value> <p-value> <p-value>

Answer 1

您可以通过 group_by 获得大部分信息, 现在您只需要 do它:

Data %>%
    do({
        data.frame(
            Data_subsets=paste(.$slice_by_1[[1]], .$slice_by_2[[1]], sep='_'),
            length=kruskal.test(.$length, .$compare_by)$p.value,
            preasure=kruskal.test(.$preasure, .$compare_by)$p.value,
            pulse=kruskal.test(.$pulse, .$compare_by)$p.value,
            stringsAsFactors=FALSE)
    }) %>%
    ungroup() %>%
    select(-starts_with("slice_"))
## Source: local data frame [6 x 4]
##     Data_subsets    length  preasure     pulse
## 1   Female_Happy 0.4369918 0.1937327 0.8767561
## 2 Female_Neutral 0.3750688 0.8588069 0.2858796
## 3     Female_Sad 0.7958502 0.6274940 0.5801208
## 4     Male_Happy 0.3099704 0.6929493 0.3796494
## 5   Male_Neutral 0.4953853 0.2986860 0.2418708
## 6       Male_Sad 0.7159970 0.8528201 0.5686672

你必须做 ungroup()删除 slice*列，自 group_by列没有删除(我想说“从不删除”，但我不确定)。