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我在执行来自 here 的代码时遇到问题.错误信息如下。
Error in .Internal(filledcontour(as.double(x), as.double(y), z, as.double(levels), : there is no .Internal function 'filledcontour'
filled.contour3 <- function (x = seq(0, 1, length.out = nrow(z)),
y = seq(0, 1, length.out = ncol(z)), z, xlim = range(x, finite = TRUE),
ylim = range(y, finite = TRUE), zlim = range(z, finite = TRUE),
levels = pretty(zlim, nlevels), nlevels = 20, color.palette = cm.colors,
col = color.palette(length(levels) - 1), plot.title, plot.axes,
key.title, key.axes, asp = NA, xaxs = "i", yaxs = "i", las = 1,
axes = TRUE, frame.plot = axes,mar, ...)
{
# modification by Ian Taylor of the filled.contour function
# to remove the key and facilitate overplotting with contour()
# further modified by Carey McGilliard and Bridget Ferris
# to allow multiple plots on one page
if (missing(z)) {
if (!missing(x)) {
if (is.list(x)) {
z <- x$z
y <- x$y
x <- x$x
}
else {
z <- x
x <- seq.int(0, 1, length.out = nrow(z))
}
}
else stop("no 'z' matrix specified")
}
else if (is.list(x)) {
y <- x$y
x <- x$x
}
if (any(diff(x) <= 0) || any(diff(y) <= 0))
stop("increasing 'x' and 'y' values expected")
# mar.orig <- (par.orig <- par(c("mar", "las", "mfrow")))$mar
# on.exit(par(par.orig))
# w <- (3 + mar.orig[2]) * par("csi") * 2.54
# par(las = las)
# mar <- mar.orig
plot.new()
# par(mar=mar)
plot.window(xlim, ylim, "", xaxs = xaxs, yaxs = yaxs, asp = asp)
if (!is.matrix(z) || nrow(z) <= 1 || ncol(z) <= 1)
stop("no proper 'z' matrix specified")
if (!is.double(z))
storage.mode(z) <- "double"
.Internal(filledcontour(as.double(x), as.double(y), z, as.double(levels),
col = col))
if (missing(plot.axes)) {
if (axes) {
title(main = "", xlab = "", ylab = "")
Axis(x, side = 1)
Axis(y, side = 2)
}
}
else plot.axes
if (frame.plot)
box()
if (missing(plot.title))
title(...)
else plot.title
invisible()
}
filled.legend <- function (x = seq(0, 1, length.out = nrow(z)), y = seq(0, 1,
length.out = ncol(z)), z, xlim
range(x, finite = TRUE),
ylim = range(y, finite = TRUE), zlim = range(z, finite = TRUE),
levels = pretty(zlim, nlevels), nlevels = 20, color.palette = cm.colors,
col = color.palette(length(levels) - 1), plot.title, plot.axes,
key.title, key.axes, asp = NA, xaxs = "i", yaxs = "i", las = 1,
axes = TRUE, frame.plot = axes, ...)
{
# modification of filled.contour by Carey McGilliard and Bridget Ferris
# designed to just plot the legend
if (missing(z)) {
if (!missing(x)) {
if (is.list(x)) {
z <- x$z
y <- x$y
x <- x$x
}
else {
z <- x
x <- seq.int(0, 1, length.out = nrow(z))
}
}
else stop("no 'z' matrix specified")
}
else if (is.list(x)) {
y <- x$y
x <- x$x
}
if (any(diff(x) <= 0) || any(diff(y) <= 0))
stop("increasing 'x' and 'y' values expected")
# mar.orig <- (par.orig <- par(c("mar", "las", "mfrow")))$mar
# on.exit(par(par.orig))
# w <- (3 + mar.orig[2L]) * par("csi") * 2.54
#layout(matrix(c(2, 1), ncol = 2L), widths = c(1, lcm(w)))
# par(las = las)
# mar <- mar.orig
# mar[4L] <- mar[2L]
# mar[2L] <- 1
# par(mar = mar)
# plot.new()
plot.window(xlim = c(0, 1), ylim = range(levels), xaxs = "i",
yaxs = "i")
rect(0, levels[-length(levels)], 1, levels[-1L], col = col)
if (missing(key.axes)) {
if (axes)
axis(4)
}
else key.axes
box()
}
#
# if (!missing(key.title))
# key.title
# mar <- mar.orig
# mar[4L] <- 1
# par(mar = mar)
# plot.new()
# plot.window(xlim, ylim, "", xaxs = xaxs, yaxs = yaxs, asp = asp)
# if (!is.matrix(z) || nrow(z) <= 1L || ncol(z) <= 1L)
# stop("no proper 'z' matrix specified")
# if (!is.double(z))
# storage.mode(z) <- "double"
# .Internal(filledcontour(as.double(x), as.double(y), z, as.double(levels),
# col = col))
# if (missing(plot.axes)) {
# if (axes) {
# title(main = "", xlab = "", ylab = "")
# Axis(x, side = 1)
# Axis(y, side = 2)
# }
# }
# else plot.axes
# if (frame.plot)
# box()
# if (missing(plot.title))
# title(...)
# else plot.title
# invisible()
#}
MakeLetter <- function(a, where="topleft", cex=2)
legend(where, pt.cex=0, bty="n", title=a, cex=cex, legend=NA)
#------------------------------------------------------
#Generate some fake data
x = rep(c(10,11,12),length = 9)
y = rep(c(1,2,3),each = 3)
z = runif(n=9,min = 0,max = 1)
xcoords = unique(x)
ycoords = unique(y)
surface.matrix = matrix(z,nrow=length(xcoords),ncol=length(ycoords),byrow=T)
#------------------------------------------------------
#plot.new() is necessary if using the modified versions of filled.contour
plot.new()
#I am organizing where the plots appear on the page using the "plt" argument in "par()"
par(new = "TRUE",plt = c(0.1,0.4,0.60,0.95),las = 1,cex.axis = 1)
#Top left plot:
filled.contour3(xcoords,ycoords,surface.matrix,color=terrain.colors,xlab = "",ylab = "",xlim = c(min(xcoords),max(xcoords)),ylim = c(min(ycoords),max(ycoords)),zlim = c(min(surface.matrix),max(surface.matrix)))
#The xpd=NA allows for writing outside the plot limits, but still using the the x and y axes to place the text
par(xpd = NA)
text(x=11,y=1.5,"x",cex = 1.5,font = 2)
MakeLetter("(a)")
#Top right plot:
par(new = "TRUE",plt = c(0.5,0.8,0.60,0.95),las = 1,cex.axis = 1)
filled.contour3(xcoords,ycoords,surface.matrix,color=heat.colors,xlab = "",ylab = "",xlim = c(min(xcoords),max(xcoords)),ylim = c(min(ycoords),max(ycoords)),zlim = c(-1,1))
#Alternatively, you could set z axis limits to depend on the min and max values in surface.matrix.
#filled.contour3(xcoords,ycoords,surface.matrix,color=heat.colors,xlab = "",ylab = "",xlim = c(min(xcoords),max(xcoords)),ylim = c(min(ycoords),max(ycoords)),zlim = c(min(surface.matrix),max(surface.matrix)))
text(x=11,y=1.5,"x",cex = 1.5,font = 2)
MakeLetter("(b)")
#Bottom left plot:
par(new = "TRUE",plt = c(0.1,0.4,0.15,0.5),las = 1,cex.axis = 1)
filled.contour3(xcoords,ycoords,surface.matrix,col=gray(seq(1,.1,length=11)), nlevels=11,xlab = "",ylab = "",xlim = c(min(xcoords),max(xcoords)),ylim = c(min(ycoords),max(ycoords)),zlim = c(-1,1))
text(x=11,y=1.5,"x",cex = 1.5,font = 2,col = "white")
MakeLetter("(c)")
#Bottom right plot:
par(new = "TRUE",plt = c(0.5,0.8,0.15,0.5),las = 1,cex.axis = 1)
filled.contour3(xcoords,ycoords,surface.matrix,color = terrain.colors,xlab = "",ylab = "",xlim = c(min(xcoords),max(xcoords)),ylim = c(min(ycoords),max(ycoords)),zlim = c(-1,1))
text(x=11,y=1.5,"hello",cex = 1.5,font = 2)
MakeLetter("(d)")
#Add a legend:
par(new = "TRUE",plt = c(0.85,0.9,0.25,0.85),las = 1,cex.axis = 1)
filled.legend(xcoords,ycoords,surface.matrix,color = terrain.colors,xlab = "",ylab = "",xlim = c(min(xintercepts),max(xintercepts)),ylim = c(min(slopes),max(slopes)),zlim = c(-1,1))
#Add some figure labels
par(xpd=NA,cex = 1.3)
text(x = -16.7,y = 0,"slope",srt = 90,cex = 1.3)
text(x = -8,y = -1.62,expression(paste(italic(x),"-intercept",sep = "")),cex = 1.3)
最佳答案
粘贴代码很有帮助。自该代码首次发布以来,fill.contour 的工作方式似乎发生了变化。换线
.Internal(filledcontour(as.double(x), as.double(y), z, as.double(levels),
col = col))
.filled.contour(as.double(x), as.double(y), z, as.double(levels),
col = col)
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