scala - spark 2.2 cache() 导致驱动程序 OutOfMemoryerror

Question

我在 AWS EMR (Zeppling/spark-shell) 上使用 Scala 运行 Spark 2.2。

我正在尝试计算非常简单的计算:加载、过滤、缓存和计算大型数据集。我的数据包含 4,500 GB (4.8 TB) ORC 格式，有 51,317,951,565(510 亿)行。

首先，我尝试使用以下集群进行处理:

1 master node - m4.xlarge - 4 cpu, 16 gb Mem

150 core nodes - r3.xlarge - 4 cpu, 29 gb Mem

150 tasks nodes - r3.xlarge - 4 cpu, 29 gb Mem

但它失败了 OutOfMemoryError .

当我查看 Spark UI 和 Ganglia 时，我看到在应用程序加载超过 80% 的数据后，驱动程序节点变得太忙，而执行程序停止工作(CPU 使用率非常低)直到它崩溃。

Ganglia CPU usage for master and worker nodes

然后我尝试通过增加驱动程序节点来执行相同的过程:

1 master node - m4.2xlarge - 8 cpu, 31 gb Mem

它成功了。

我不明白为什么 Driver 节点的内存使用会在它崩溃之前得到满足。 AFAIK 只有 executors 加载和处理任务，数据不应传递给 master。可能是什么原因？

1) Ganglia Master Node usage for the second scenario

2) Spark UI stages

3) Spark UI DAG visualization

您可以在下面找到代码:

import org.apache.spark.SparkConf
import org.apache.spark.sql.{Dataset, SaveMode, SparkSession, DataFrame}
import org.apache.spark.sql.functions.{concat_ws, expr, lit, udf}
import org.apache.spark.storage.StorageLevel

val df = spark.sql("select * from default.level_1 where date_  >= ('2017-11-08') and date_  <= ('2017-11-27')")
.drop("carrier", "city", "connection_type", "geo_country", "geo_country","geo_lat","geo_lon","geo_lon","geo_type", "ip","keywords","language","lat","lon","store_category","GEO3","GEO4")
.where("GEO4 is not null")
.withColumn("is_away", lit(0))


df.persist(StorageLevel.MEMORY_AND_DISK_SER)
df.count()

您可以在下面找到错误消息 -

{"Event":"SparkListenerLogStart","Spark Version":"2.2.0"}
{"Event":"SparkListenerBlockManagerAdded","Block Manager ID":{"Executor ID":"driver","Host":"10.44.6.179","Port":44257},"Maximum Memory":6819151872,"Timestamp":1512024674827,"Maximum Onheap Memory":6819151872,"Maximum Offheap Memory":0}
{"Event":"SparkListenerEnvironmentUpdate","JVM Information":{"Java Home":"/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.141-1.b16.32.amzn1.x86_64/jre","Java Version":"1.8.0_141 (Oracle Corporation)","Scala Version":"version 2.11.8"},"Spark Properties":{"spark.sql.warehouse.dir":"hdfs:///user/spark/warehouse","spark.yarn.dist.files":"file:/etc/spark/conf/hive-site.xml","spark.executor.extraJavaOptions":"-verbose:gc -XX:+PrintGCDetails -XX:+PrintGCDateStamps -XX:+UseConcMarkSweepGC -XX:CMSInitiatingOccupancyFraction=70 -XX:MaxHeapFreeRatio=70 -XX:+CMSClassUnloadingEnabled -XX:OnOutOfMemoryError='kill -9 %p'","spark.driver.host":"10.44.6.179","spark.history.fs.logDirectory":"hdfs:///var/log/spark/apps","spark.eventLog.enabled":"true","spark.driver.port":"33707","spark.shuffle.service.enabled":"true","spark.driver.extraLibraryPath":"/usr/lib/hadoop/lib/native:/usr/lib/hadoop-lzo/lib/native","spark.repl.class.uri":"spark://10.44.6.179:33707/classes","spark.jars":"","spark.yarn.historyServer.address":"ip-10-44-6-179.ec2.internal:18080","spark.stage.attempt.ignoreOnDecommissionFetchFailure":"true","spark.repl.class.outputDir":"/mnt/tmp/spark-52cac1b4-614f-43a5-ab9b-5c60c6c1c5a5/repl-9389c888-603e-4988-9593-86e298d2514a","spark.app.name":"Spark shell","spark.scheduler.mode":"FIFO","spark.driver.memory":"11171M","spark.executor.instances":"200","spark.default.parallelism":"3200","spark.resourceManager.cleanupExpiredHost":"true","spark.executor.id":"driver","spark.yarn.appMasterEnv.SPARK_PUBLIC_DNS":"$(hostname -f)","spark.driver.extraJavaOptions":"-XX:+UseConcMarkSweepGC -XX:CMSInitiatingOccupancyFraction=70 -XX:MaxHeapFreeRatio=70 -XX:+CMSClassUnloadingEnabled -XX:OnOutOfMemoryError='kill -9 %p'","spark.submit.deployMode":"client","spark.master":"yarn","spark.ui.filters":"org.apache.hadoop.yarn.server.webproxy.amfilter.AmIpFilter","spark.blacklist.decommissioning.timeout":"1h","spark.executor.extraLibraryPath":"/usr/lib/hadoop/lib/native:/usr/lib/hadoop-lzo/lib/native","spark.sql.hive.metastore.sharedPrefixes":"com.amazonaws.services.dynamodbv2","spark.executor.memory":"20480M","spark.driver.extraClassPath":"/usr/lib/hadoop-lzo/lib/*:/usr/lib/hadoop/hadoop-aws.jar:/usr/share/aws/aws-java-sdk/*:/usr/share/aws/emr/emrfs/conf:/usr/share/aws/emr/emrfs/lib/*:/usr/share/aws/emr/emrfs/auxlib/*:/usr/share/aws/emr/security/conf:/usr/share/aws/emr/security/lib/*:/usr/share/aws/hmclient/lib/aws-glue-datacatalog-spark-client.jar:/usr/share/java/Hive-JSON-Serde/hive-openx-serde.jar","spark.home":"/usr/lib/spark","spark.eventLog.dir":"hdfs:///var/log/spark/apps","spark.dynamicAllocation.enabled":"true","spark.executor.extraClassPath":"/usr/lib/hadoop-lzo/lib/*:/usr/lib/hadoop/hadoop-aws.jar:/usr/share/aws/aws-java-sdk/*:/usr/share/aws/emr/emrfs/conf:/usr/share/aws/emr/emrfs/lib/*:/usr/share/aws/emr/emrfs/auxlib/*:/usr/share/aws/emr/security/conf:/usr/share/aws/emr/security/lib/*:/usr/share/aws/hmclient/lib/aws-glue-datacatalog-spark-client.jar:/usr/share/java/Hive-JSON-Serde/hive-openx-serde.jar","spark.sql.catalogImplementation":"hive","spark.executor.cores":"8","spark.history.ui.port":"18080","spark.driver.appUIAddress":"http://ip-10-44-6-179.ec2.internal:4040","spark.org.apache.hadoop.yarn.server.webproxy.amfilter.AmIpFilter.param.PROXY_HOSTS":"ip-10-44-6-

备注 -

1) 我尝试将 StorageLevel 更改为 cache()和 DISK_ONLY并没有影响结果。

2)我查看了“scratch space”的体积，发现90%以上还没有使用。

谢谢!!

Answer 1

我有一些假设，这可能是由 spark SQL 内部的机制引起的。

简而言之，spark SQL 将在驱动程序端收集所有广播数据集，以便当您有一个大查询时，驱动程序必须有足够的内存来保存广播数据。

相关link to the issue