r - 在Mac中安装ROracle

Question

我在Mac OS Sierra上。

我尝试做-Installation of RODBC/ROracle packages on OS X Mavericks，但没有帮助。

这是我所做的:

从http://www.oracle.com/technetwork/topics/intel-macsoft-096467.html下载-基本，Sql plus，odbc

在Instantclient_12_1

中解压缩到我的主文件夹中

ln -s libclntsh.dylib.12.1 libclntsh.dylib

导出DYLD_LIBRARY_PATH =/Users/dhananjaygoel/instantclient_12_1:$ DYLD_LIBRARY_PATH

R CMD安装--configure-args ='-with-oci-lib =/Users/dhananjaygoel/instantclient_12_1'ROracle_1.3-1.tar.gz

它给了我以下错误:

* installing to library ‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library’
* installing *source* package ‘ROracle’ ...
** package ‘ROracle’ successfully unpacked and MD5 sums checked
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/Users/dhananjaygoel/instantclient_12_1/sdk/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -I/opt/local/include -c rodbi.c -o rodbi.o
rodbi.c:2432:53: warning: format specifies type 'long long' but the argument has
      type 'sb8' (aka 'long') [-Wformat]
        sprintf(err_buf, RODBI_ERR_BIND_VAL_TOOBIG, bndsz);
                                                    ^~~~~
/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
  __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
                                                       ^~~~~~~~~~~
rodbi.c:2469:53: warning: format specifies type 'long long' but the argument has
      type 'sb8' (aka 'long') [-Wformat]
        sprintf(err_buf, RODBI_ERR_BIND_VAL_TOOBIG, bndsz);
                                                    ^~~~~
/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
  __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
                                                       ^~~~~~~~~~~
rodbi.c:2816:55: warning: format specifies type 'long long' but the argument has
      type 'sb8' (aka 'long') [-Wformat]
          sprintf(err_buf, RODBI_ERR_BIND_VAL_TOOBIG, bndsz);
                                                      ^~~~~
/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
  __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
                                                       ^~~~~~~~~~~
rodbi.c:2861:55: warning: format specifies type 'long long' but the argument has
      type 'sb8' (aka 'long') [-Wformat]
          sprintf(err_buf, RODBI_ERR_BIND_VAL_TOOBIG, bndsz);
                                                      ^~~~~
/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
  __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
                                                       ^~~~~~~~~~~
4 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/Users/dhananjaygoel/instantclient_12_1/sdk/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -I/opt/local/include -c rooci.c -o rooci.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o ROracle.so rodbi.o rooci.o -L/Users/dhananjaygoel/instantclient_12_1 -lclntsh -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.3/Resources/library/ROracle/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/Library/Frameworks/R.framework/Versions/3.3/Resources/library/ROracle/libs/ROracle.so':
  dlopen(/Library/Frameworks/R.framework/Versions/3.3/Resources/library/ROracle/libs/ROracle.so, 6): Library not loaded: @rpath/libclntsh.dylib.12.1
  Referenced from: /Library/Frameworks/R.framework/Versions/3.3/Resources/library/ROracle/libs/ROracle.so
  Reason: image not found
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library/ROracle’

有人请帮忙。

Answer 1

以下内容对我在运行El Capitan的一些机器上有效，因此也许可以在High Sierra上使用。与其他一些说明不同，这不需要您禁用SIP。

安装Oracle Instant Client Basic，SDK和SQL * Plus软件包。我很确定我没有使用ODBC程序包，尽管如果有的话它也不会妨碍您。

创建或编辑~/.R/Makevars。添加以下内容:

CC=/usr/bin/clang -rpath /Users/dhananjaygoel/instantclient_12_1
LDFLAGS=-L/Users/dhananjaygoel/instantclient_12_1

CC中的-rpath设置和LDFLAGS中的-L链接目录都应该是Instant Client的.dylib文件的位置。如果您已将它们移到另一个位置(我个人更喜欢创建一个/lib子目录并将其放在此处)，那么这就是您要指向的位置。

运行安装命令:
R CMD INSTALL --configure-args='--with-oci-lib=/Users/dhananjaygoel/instantclient_12_1' ROracle_1.3-1.tar.gz--with-oci-lib=指向Instant Client的根目录(与Makevars中的引用不同，据我所知，这不依赖.dylib文件的位置)。