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python - 构建 Cython 扩展时出现错误 : ‘PyThreadState’ {aka ‘struct _ts’ } has no member named ‘exc_type’ ; did you mean ‘curexc_type’ ?

转载 作者:行者123 更新时间:2023-12-04 08:16:09 24 4
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我在 Python 3.8 中收到以下错误,而在 Python 3.6 中没有收到该错误。我怎样才能让它与 Python 3.8 一起工作?为了重现错误,请按照此处操作:https://github.com/davidstutz/mesh-fusion/issues/7

[3645:3637 0:2090] 11:04:08 Tue Jan 12 [mona@goku:pts/0 +1] ~/mesh-fusion/libfusiongpu
$ python setup.py build_ext --inplace
Added OpenMP
running build_ext
skipping 'cyfusion.cpp' Cython extension (up-to-date)
building 'cyfusion' extension
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/mona/venv/tsdf/lib/python3.8/site-packages/numpy/core/include -I/home/mona/venv/tsdf/include -I/usr/include/python3.8 -c cyfusion.cpp -o build/temp.linux-x86_64-3.8/cyfusion.o -ffast-math -msse -msse2 -msse3 -msse4.2 -fopenmp
In file included from /home/mona/venv/tsdf/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
from /home/mona/venv/tsdf/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /home/mona/venv/tsdf/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from cyfusion.cpp:531:
/home/mona/venv/tsdf/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
cyfusion.cpp: In function ‘PyObject* PyInit_cyfusion()’:
cyfusion.cpp:22866:32: warning: ‘_typeobject::tp_print’ is deprecated [-Wdeprecated-declarations]
22866 | __pyx_type_8cyfusion_PyViews.tp_print = 0;
| ^~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
from /usr/include/python3.8/pytime.h:6,
from /usr/include/python3.8/Python.h:85,
from cyfusion.cpp:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
| ^~~~~~~~
cyfusion.cpp:22866:32: warning: ‘_typeobject::tp_print’ is deprecated [-Wdeprecated-declarations]
22866 | __pyx_type_8cyfusion_PyViews.tp_print = 0;
| ^~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
from /usr/include/python3.8/pytime.h:6,
from /usr/include/python3.8/Python.h:85,
from cyfusion.cpp:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
| ^~~~~~~~
cyfusion.cpp:22866:32: warning: ‘_typeobject::tp_print’ is deprecated [-Wdeprecated-declarations]
22866 | __pyx_type_8cyfusion_PyViews.tp_print = 0;
| ^~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
from /usr/include/python3.8/pytime.h:6,
from /usr/include/python3.8/Python.h:85,
from cyfusion.cpp:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
| ^~~~~~~~
cyfusion.cpp:22871:33: warning: ‘_typeobject::tp_print’ is deprecated [-Wdeprecated-declarations]
22871 | __pyx_type_8cyfusion_PyVolume.tp_print = 0;
| ^~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
from /usr/include/python3.8/pytime.h:6,
from /usr/include/python3.8/Python.h:85,
from cyfusion.cpp:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
| ^~~~~~~~
cyfusion.cpp:22871:33: warning: ‘_typeobject::tp_print’ is deprecated [-Wdeprecated-declarations]
22871 | __pyx_type_8cyfusion_PyVolume.tp_print = 0;
| ^~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
from /usr/include/python3.8/pytime.h:6,
from /usr/include/python3.8/Python.h:85,
from cyfusion.cpp:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
| ^~~~~~~~
cyfusion.cpp:22871:33: warning: ‘_typeobject::tp_print’ is deprecated [-Wdeprecated-declarations]
22871 | __pyx_type_8cyfusion_PyVolume.tp_print = 0;
| ^~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
from /usr/include/python3.8/pytime.h:6,
from /usr/include/python3.8/Python.h:85,
from cyfusion.cpp:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
| ^~~~~~~~
cyfusion.cpp:22878:26: warning: ‘_typeobject::tp_print’ is deprecated [-Wdeprecated-declarations]
22878 | __pyx_type___pyx_array.tp_print = 0;
| ^~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
from /usr/include/python3.8/pytime.h:6,
from /usr/include/python3.8/Python.h:85,
from cyfusion.cpp:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
| ^~~~~~~~
cyfusion.cpp:22878:26: warning: ‘_typeobject::tp_print’ is deprecated [-Wdeprecated-declarations]
22878 | __pyx_type___pyx_array.tp_print = 0;
| ^~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
from /usr/include/python3.8/pytime.h:6,
from /usr/include/python3.8/Python.h:85,
from cyfusion.cpp:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
| ^~~~~~~~
cyfusion.cpp:22878:26: warning: ‘_typeobject::tp_print’ is deprecated [-Wdeprecated-declarations]
22878 | __pyx_type___pyx_array.tp_print = 0;
| ^~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
from /usr/include/python3.8/pytime.h:6,
from /usr/include/python3.8/Python.h:85,
from cyfusion.cpp:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
| ^~~~~~~~
cyfusion.cpp:22883:32: warning: ‘_typeobject::tp_print’ is deprecated [-Wdeprecated-declarations]
22883 | __pyx_type___pyx_MemviewEnum.tp_print = 0;
| ^~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
from /usr/include/python3.8/pytime.h:6,
from /usr/include/python3.8/Python.h:85,
from cyfusion.cpp:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
| ^~~~~~~~
cyfusion.cpp:22883:32: warning: ‘_typeobject::tp_print’ is deprecated [-Wdeprecated-declarations]
22883 | __pyx_type___pyx_MemviewEnum.tp_print = 0;
| ^~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
from /usr/include/python3.8/pytime.h:6,
from /usr/include/python3.8/Python.h:85,
from cyfusion.cpp:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
| ^~~~~~~~
cyfusion.cpp:22883:32: warning: ‘_typeobject::tp_print’ is deprecated [-Wdeprecated-declarations]
22883 | __pyx_type___pyx_MemviewEnum.tp_print = 0;
| ^~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
from /usr/include/python3.8/pytime.h:6,
from /usr/include/python3.8/Python.h:85,
from cyfusion.cpp:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
| ^~~~~~~~
cyfusion.cpp:22895:31: warning: ‘_typeobject::tp_print’ is deprecated [-Wdeprecated-declarations]
22895 | __pyx_type___pyx_memoryview.tp_print = 0;
| ^~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
from /usr/include/python3.8/pytime.h:6,
from /usr/include/python3.8/Python.h:85,
from cyfusion.cpp:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
| ^~~~~~~~
cyfusion.cpp:22895:31: warning: ‘_typeobject::tp_print’ is deprecated [-Wdeprecated-declarations]
22895 | __pyx_type___pyx_memoryview.tp_print = 0;
| ^~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
from /usr/include/python3.8/pytime.h:6,
from /usr/include/python3.8/Python.h:85,
from cyfusion.cpp:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
| ^~~~~~~~
cyfusion.cpp:22895:31: warning: ‘_typeobject::tp_print’ is deprecated [-Wdeprecated-declarations]
22895 | __pyx_type___pyx_memoryview.tp_print = 0;
| ^~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
from /usr/include/python3.8/pytime.h:6,
from /usr/include/python3.8/Python.h:85,
from cyfusion.cpp:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
| ^~~~~~~~
cyfusion.cpp:22905:36: warning: ‘_typeobject::tp_print’ is deprecated [-Wdeprecated-declarations]
22905 | __pyx_type___pyx_memoryviewslice.tp_print = 0;
| ^~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
from /usr/include/python3.8/pytime.h:6,
from /usr/include/python3.8/Python.h:85,
from cyfusion.cpp:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
| ^~~~~~~~
cyfusion.cpp:22905:36: warning: ‘_typeobject::tp_print’ is deprecated [-Wdeprecated-declarations]
22905 | __pyx_type___pyx_memoryviewslice.tp_print = 0;
| ^~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
from /usr/include/python3.8/pytime.h:6,
from /usr/include/python3.8/Python.h:85,
from cyfusion.cpp:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
| ^~~~~~~~
cyfusion.cpp:22905:36: warning: ‘_typeobject::tp_print’ is deprecated [-Wdeprecated-declarations]
22905 | __pyx_type___pyx_memoryviewslice.tp_print = 0;
| ^~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
from /usr/include/python3.8/pytime.h:6,
from /usr/include/python3.8/Python.h:85,
from cyfusion.cpp:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
| ^~~~~~~~
cyfusion.cpp: In function ‘void __Pyx__ExceptionSave(PyThreadState*, PyObject**, PyObject**, PyObject**)’:
cyfusion.cpp:24028:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
24028 | *type = tstate->exc_type;
| ^~~~~~~~
| curexc_type
cyfusion.cpp:24029:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
24029 | *value = tstate->exc_value;
| ^~~~~~~~~
| curexc_value
cyfusion.cpp:24030:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
24030 | *tb = tstate->exc_traceback;
| ^~~~~~~~~~~~~
| curexc_traceback
cyfusion.cpp: In function ‘void __Pyx__ExceptionReset(PyThreadState*, PyObject*, PyObject*, PyObject*)’:
cyfusion.cpp:24037:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
24037 | tmp_type = tstate->exc_type;
| ^~~~~~~~
| curexc_type
cyfusion.cpp:24038:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
24038 | tmp_value = tstate->exc_value;
| ^~~~~~~~~
| curexc_value
cyfusion.cpp:24039:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
24039 | tmp_tb = tstate->exc_traceback;
| ^~~~~~~~~~~~~
| curexc_traceback
cyfusion.cpp:24040:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
24040 | tstate->exc_type = type;
| ^~~~~~~~
| curexc_type
cyfusion.cpp:24041:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
24041 | tstate->exc_value = value;
| ^~~~~~~~~
| curexc_value
cyfusion.cpp:24042:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
24042 | tstate->exc_traceback = tb;
| ^~~~~~~~~~~~~
| curexc_traceback
cyfusion.cpp: In function ‘int __Pyx__GetException(PyThreadState*, PyObject**, PyObject**, PyObject**)’:
cyfusion.cpp:24112:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
24112 | tmp_type = tstate->exc_type;
| ^~~~~~~~
| curexc_type
cyfusion.cpp:24113:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
24113 | tmp_value = tstate->exc_value;
| ^~~~~~~~~
| curexc_value
cyfusion.cpp:24114:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
24114 | tmp_tb = tstate->exc_traceback;
| ^~~~~~~~~~~~~
| curexc_traceback
cyfusion.cpp:24115:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
24115 | tstate->exc_type = local_type;
| ^~~~~~~~
| curexc_type
cyfusion.cpp:24116:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
24116 | tstate->exc_value = local_value;
| ^~~~~~~~~
| curexc_value
cyfusion.cpp:24117:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
24117 | tstate->exc_traceback = local_tb;
| ^~~~~~~~~~~~~
| curexc_traceback
cyfusion.cpp: In function ‘void __Pyx__ExceptionSwap(PyThreadState*, PyObject**, PyObject**, PyObject**)’:
cyfusion.cpp:24354:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
24354 | tmp_type = tstate->exc_type;
| ^~~~~~~~
| curexc_type
cyfusion.cpp:24355:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
24355 | tmp_value = tstate->exc_value;
| ^~~~~~~~~
| curexc_value
cyfusion.cpp:24356:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
24356 | tmp_tb = tstate->exc_traceback;
| ^~~~~~~~~~~~~
| curexc_traceback
cyfusion.cpp:24357:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
24357 | tstate->exc_type = *type;
| ^~~~~~~~
| curexc_type
cyfusion.cpp:24358:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
24358 | tstate->exc_value = *value;
| ^~~~~~~~~
| curexc_value
cyfusion.cpp:24359:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
24359 | tstate->exc_traceback = *tb;
| ^~~~~~~~~~~~~
| curexc_traceback
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
19149/31772MB(tsdf)


我有:
$ pip --version
pip 20.3.3 from /home/mona/venv/tsdf/lib/python3.8/site-packages/pip (python 3.8)
19149/31772MB(tsdf)
[3645:3637 0:2092] 11:06:58 Tue Jan 12 [mona@goku:pts/0 +1] ~/mesh-fusion/libfusiongpu
$ python
Python 3.8.5 (default, Jul 28 2020, 12:59:40)
[GCC 9.3.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import cython
>>> cython.__version__
'0.29.21'
>>> quit()
19149/31772MB(tsdf)
[3645:3637 0:2093] 11:07:14 Tue Jan 12 [mona@goku:pts/0 +1] ~/mesh-fusion/libfusiongpu
$ lsb_release -a
LSB Version: core-11.1.0ubuntu2-noarch:security-11.1.0ubuntu2-noarch
Distributor ID: Ubuntu
Description: Ubuntu 20.04.1 LTS
Release: 20.04
Codename: focal
19365/31772MB(tsdf)

最佳答案

使用 -f 强制重建/重新生成 cythonized 文件(或 --force ),即:

python setup.py build_ext -i -f
或者如果使用 pip :
pip install --global-option build --global-option --force .
大致可以理解为:安装前运行 build (包括 build_ext )与选项 ´--force`。

手头的问题是,Cython 生成的 c/cpp 文件将来可能会与新的 Python 版本不兼容。
例如,Cython 0.27 不支持 Python3.8,因为当时 Python3.8 还不存在。因此,使用 Cython 0.27 创建的 c/cpp 文件(例如来自 git-repository 的 cyfusion.cpp)不会使用 Py3.8+-headers 构建。 distutils使用时间戳来决定文件是否应该重建/重新生成/再循环,就它而言,Cython 生成的 cyfusion.cpp -file 是最新的 - 因为 cyfusion.pyx一代后没有改变。完全不考虑整个不同的 Python/Cython 版本业务。
因此,强制 distutils 重建所有内容可以解决过时的 c/cpp 文件的问题。
一般来说,我认为将 cython 生成的文件放入发行版/git 不是一个好主意,因为它可能/将来会成为绊脚石,有一些例子:
  • ““tp_print 不是 _typeobject 的成员”-Python3.9+ 的错误(例如这个 post)
  • 较旧的 cython 版本没有属性 __reduce_cython__ (例如这个 post)

  • 另一种可能的解决方法是删除过时的(cython 生成的) cyfusion.cpp - 来自发行版/git-repository 的文件并运行
    python setup.py build_ext -i
    然后。

    关于python - 构建 Cython 扩展时出现错误 : ‘PyThreadState’ {aka ‘struct _ts’ } has no member named ‘exc_type’ ; did you mean ‘curexc_type’ ?,我们在Stack Overflow上找到一个类似的问题: https://stackoverflow.com/questions/65695724/

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