java - Renjin无法安装(默认)软件包

Question

我是Renjin的新手，无法使用AetherPackageLoader安装软件包。我收到与Renjin can't load pckages中相同的错误，但看似正确的Gradle文件(请注意a4Base依赖项):

testCompile group: 'junit', name: 'junit', version: '4.12'
compile "org.renjin:renjin-script-engine:3.5-beta43";
//    compile group: 'org.renjin.cran', name: 'e1071', version: '1.7-2-b1'
compile group: 'org.renjin', name: 'renjin-aether-package-loader', version: '0.8.1938'
compile "org.renjin.bioconductor:a4Base:1.27.0-b3"

完整的错误是:

18:08:35: Executing task 'PackageTest.main()'...

Starting Gradle Daemon...
Gradle Daemon started in 1 s 867 ms
> Task :compileJava
> Task :processResources NO-SOURCE
> Task :classes

> Task :PackageTest.main() FAILED
Using local repository: /Users/miguel/.m2/repository
Exception in thread "main" java.lang.RuntimeException: org.renjin.eval.EvalException: org.renjin.aether.AetherPackageLoader.load(Lorg/renjin/primitives/packaging/FqPackageName;)Ljava/util/Optional;
    at org.renjin.eval.SessionBuilder.build(SessionBuilder.java:192)
    at PackageTest.main(PackageTest.java:26)
Caused by: org.renjin.eval.EvalException: org.renjin.aether.AetherPackageLoader.load(Lorg/renjin/primitives/packaging/FqPackageName;)Ljava/util/Optional;
    at org.renjin.sexp.Closure.applyPromised(Closure.java:212)
    at org.renjin.sexp.Closure.apply(Closure.java:133)
    at org.renjin.sexp.FunctionCall.eval(FunctionCall.java:80)
    at org.renjin.eval.Context.evaluate(Context.java:282)
    at org.renjin.eval.Context.evaluate(Context.java:209)
    at org.renjin.eval.SessionBuilder.build(SessionBuilder.java:187)
    ... 1 more
Caused by: java.lang.AbstractMethodError: org.renjin.aether.AetherPackageLoader.load(Lorg/renjin/primitives/packaging/FqPackageName;)Ljava/util/Optional;
    at org.renjin.primitives.packaging.NamespaceRegistry.getNamespace(NamespaceRegistry.java:152)
    at org.renjin.primitives.packaging.NamespaceRegistry.getNamespace(NamespaceRegistry.java:130)
    at org.renjin.primitives.packaging.NamespaceRegistry.getNamespace(NamespaceRegistry.java:114)
    at org.renjin.primitives.packaging.Packages.library(Packages.java:39)
    at org.renjin.primitives.R$primitive$library.doApply(R$primitive$library.java:68)
    at org.renjin.primitives.R$primitive$library.applyPromised(R$primitive$library.java:33)
    at org.renjin.sexp.BuiltinFunction.apply(BuiltinFunction.java:100)
    at org.renjin.primitives.special.InternalFunction.apply(InternalFunction.java:46)
    at org.renjin.sexp.FunctionCall.eval(FunctionCall.java:80)
    at org.renjin.eval.Context.evaluate(Context.java:282)
    at org.renjin.primitives.special.BeginFunction.apply(BeginFunction.java:39)
    at org.renjin.sexp.FunctionCall.eval(FunctionCall.java:80)
    at org.renjin.sexp.Closure.applyPromised(Closure.java:200)
    ... 6 more

FAILURE: Build failed with an exception.

* What went wrong:
Execution failed for task ':PackageTest.main()'.
> Process 'command '/Library/Java/JavaVirtualMachines/jdk1.8.0_231.jdk/Contents/Home/bin/java'' finished with non-zero exit value 1

* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights.

* Get more help at https://help.gradle.org

BUILD FAILED in 48s
2 actionable tasks: 2 executed
18:09:24: Task execution finished 'PackageTest.main()'.

该示例代码仅使用AetherPackageLoader实例配置 session ，并尝试执行R命令来加载需要安装的库。当 session 构建器创建 session 并加载默认程序包时，代码将很快失败。

AetherPackageLoader loader = new AetherPackageLoader();
loader.setRepositoryListener(new ConsoleRepositoryListener(System.out));
loader.setTransferListener(new ConsoleTransferListener(System.out));

Session session = new SessionBuilder()
        .withDefaultPackages()
        .setPackageLoader(loader)
        .build();

RenjinScriptEngineFactory factory = new RenjinScriptEngineFactory();
RenjinScriptEngine engine = factory.getScriptEngine(session);

String code = "library('digest')";

SEXP sexp = (SEXP)engine.eval(code);
System.out.println(sexp);

非常感谢AetherPackageLoader的帮助。我阅读了文档，无法说出缺少的内容。非常感谢，
米格尔

编辑:我无法在Windows PC上重现此错误。我认为这与自更新MacOS Catalina之后在RStudio中遇到的其他错误有关。我认为更新后的权限存在问题。

Answer 1

如果将依赖项包含在gradle文件中，则这些库将在类路径中可用，并且无需使用AetherPackageLoader。