作者热门文章
- html - 出于某种原因,IE8 对我的 Sass 文件中继承的 html5 CSS 不友好?
- JMeter 在响应断言中使用 span 标签的问题
- html - 在 :hover and :active? 上具有不同效果的 CSS 动画
- html - 相对于居中的 html 内容固定的 CSS 重复背景?
我是 OWL API 的新手,因此在检索数据时遇到一些问题。
假设我有以下数据:
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/GO_0044297">
<oboInOwl:creation_date>"2010-02-05T10:37:16Z"</oboInOwl:creation_date>
<obo:IAO_0000115>"The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections."</obo:IAO_0000115>
<oboInOwl:hasOBONamespace>"cellular_component"</oboInOwl:hasOBONamespace>
<oboInOwl:hasDbXref>"Wikipedia:Cell_body"</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>"FMA:67301"</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym>"cell soma"</oboInOwl:hasExactSynonym>
<rdfs:label>"cell body"</rdfs:label>
<rdfs:subClassOf>http://purl.obolibrary.org/obo/GO_0044464</rdfs:subClassOf>
<oboInOwl:hasDbXref>"FBbt:00005107"</oboInOwl:hasDbXref>
<rdf:type>http://www.w3.org/2002/07/owl#Class</rdf:type>
<oboInOwl:id>"GO:0044297"</oboInOwl:id>
<rdfs:comment>"Note that 'cell body' and 'cell soma' are not used in the literature for cells that lack projections, nor for some cells (e.g. yeast with mating projections) that do have projections."</rdfs:comment>
<oboInOwl:created_by>"xyz"</oboInOwl:created_by>
<oboInOwl:inSubset>http://purl.obolibrary.org/obo/go#goslim_pir</oboInOwl:inSubset>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/GO_0071509">
<oboInOwl:hasRelatedSynonym>"activation of MAPKK activity involved in mating response"</oboInOwl:hasRelatedSynonym>
<rdfs:subClassOf>http://purl.obolibrary.org/obo/GO_0090028</rdfs:subClassOf>
<oboInOwl:hasOBONamespace>"biological_process"</oboInOwl:hasOBONamespace>
<oboInOwl:hasExactSynonym>"activation of MAP kinase kinase activity during conjugation with cellular fusion"</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>"conjugation with cellular fusion, activation of MAPKK activity"</oboInOwl:hasExactSynonym>
<rdfs:label>"activation of MAPKK activity involved in conjugation with cellular fusion"</rdfs:label>
<rdf:type>http://www.w3.org/2002/07/owl#Class</rdf:type>
<oboInOwl:id>"GO:0071509"</oboInOwl:id>
<oboInOwl:creation_date>"2010-01-05T02:09:58Z"</oboInOwl:creation_date>
<oboInOwl:hasExactSynonym>"conjugation with cellular fusion, activation of MAP kinase kinase activity"</oboInOwl:hasExactSynonym>
<oboInOwl:created_by>"midori"</oboInOwl:created_by>
<obo:IAO_0000115>"Any process that initiates the activity of the inactive enzyme MAP kinase kinase in the context of conjugation with cellular fusion."</obo:IAO_0000115>
<rdfs:subClassOf>http://purl.obolibrary.org/obo/GO_0000186</rdfs:subClassOf>
</rdf:Description>
对于每个“rdf:description”,我想使用java中的OWL API检索其相应的“rdf:label”,“oboInOwl:hasExactSynonym”和“rdfs:subClassOf”。
到目前为止,我可以获得所有标签,但无法获取哪个标签对应哪个描述的链接。
目前我的代码如下所示:
OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
OWLOntology pizzaOntology = manager.loadOntologyFromOntologyDocument(f);
Set<OWLOntology> allOntologies = manager.getImportsClosure(pizzaOntology);
//System.out.println(allOntologies);
OWLReasonerFactory reasonerFactory = new ElkReasonerFactory();
OWLReasoner reasoner = reasonerFactory.createReasoner(pizzaOntology);
//pizzaOntology
OWLDataFactory factory = manager.getOWLDataFactory();
Set<OWLAxiom> axiom = pizzaOntology.getAxioms();
for (OWLAxiom o : axiom) {
AxiomType<?> at = o.getAxiomType();
//System.out.println("Annotation type is "+at+" for "+o);
if (at == AxiomType.ANNOTATION_ASSERTION) {
OWLAnnotationAssertionAxiom ax = (OWLAnnotationAssertionAxiom) o;
//Check if the axiom is a label and write to file
if(ax.getProperty().toString().contains("hasExactSynonym"))
System.out.println("Data is "+ax.getValue().toString());
if (ax.getProperty().equals(factory.getRDFSLabel())) {
String label = ax.getValue().toString();
label = label.toLowerCase();
label = label.replaceAll("[^\\p{L}\\p{Nd}]+", " ");
allLabels.add(label);
}
}
}
有人可以帮助我对此有一些想法吗?
最佳答案
这应该有帮助:
OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
OWLOntology pizzaOntology = manager.loadOntologyFromOntologyDocument(f);
Set<OWLOntology> allOntologies = manager.getImportsClosure(pizzaOntology);
// System.out.println(allOntologies);
OWLReasonerFactory reasonerFactory = new ElkReasonerFactory();
OWLReasoner reasoner = reasonerFactory.createReasoner(pizzaOntology);
// pizzaOntology
OWLDataFactory factory = manager.getOWLDataFactory();
Map<OWLAnnotationSubject, String> allLabels = new HashMap<>();
Map<OWLAnnotationSubject, String> allExactSynonyms = new HashMap<>();
for (OWLAnnotationAssertionAxiom ax : pizzaOntology
.getAxioms(AxiomType.ANNOTATION_ASSERTION)) {
// Check if the axiom is a label and write to file
OWLAnnotationSubject subject = ax.getSubject();
if (ax.getProperty().toString().contains("hasExactSynonym")) {
allExactSynonyms.put(subject, ax.getValue().toString());
}
if (ax.getProperty().equals(factory.getRDFSLabel())) {
String label = ax.getValue().toString();
label = label.toLowerCase();
label = label.replaceAll("[^\\p{L}\\p{Nd}]+", " ");
allLabels.put(subject, label);
}
}
这两个映射保存 IRI(在这种情况下,注释主题始终是 IRI - 注释附加到类的 IRI,而不是类本身)和属性值之间的关系。如果将标签值与 IRI 的属性值相匹配,则可以通过 map 中的 IRI 找到另一个值。
关于java - 如何检索 <oboInOwl :hasExactSynonym> from every <rdf:Description> using OWL API,我们在Stack Overflow上找到一个类似的问题: https://stackoverflow.com/questions/43306382/
我是 OWL API 的新手,因此在检索数据时遇到一些问题。 假设我有以下数据: "2010-02-05T10:37:16Z" "The portion of a c
我是一名优秀的程序员,十分优秀!