r - 在 R 数据帧的另一列中提取具有最大值的唯一行

Question

我有这个名为 mydf 的数据框。 Sample 列中有重复的示例。我想提取具有最大 total_reads 的唯一样本行并获得 result。

mydf<-structure(list(Sample = c("AOGC-02-0188", "AOGC-02-0191", "AOGC-02-0191", 
"AOGC-02-0191", "AOGC-02-0194", "AOGC-02-0194", "AOGC-02-0194"
), total_reads = c(27392583, 19206920, 34462563, 53669483, 24731988, 
43419826, 68151814), Lane = c("4", "5", "4", "4;5", "5", "4", 
"4;5")), .Names = c("Sample", "total_reads", "Lane"), row.names = c("166", 
"169", "170", "171", "173", "174", "175"), class = "data.frame")

结果

  Sample        total_reads  Lane
 AOGC-02-0188    27392583    4
 AOGC-02-0191    53669483  4;5
 AOGC-02-0194    68151814  4;5

Answer 1

您可以聚合，然后合并，

merge(aggregate(total_reads ~ Sample, mydf, max), mydf)
#        Sample total_reads Lane
#1 AOGC-02-0188    27392583    4
#2 AOGC-02-0191    53669483  4;5
#3 AOGC-02-0194    68151814  4;5