java - 将 UMLS 用户名和密码添加到 Ctakes

Question

我是 cTAKES 的新用户。我按照用户安装指南添加了 UMLS 访问权限。编辑 runctakesCPE.bat 和 runctakesCVD.bat 后，我​​得到以下内容:

F:\apache-ctakes-4.0.0>set CTAKES_HOME=F:\apache-ctakes-4.0.0

F:\apache-ctakes-4.0.0>if exist "F:\apache-ctakes-4.0.0\bin\runctakesCVD.bat" goto okHome

F:\apache-ctakes-4.0.0>if exist "C:\Program Files\Java\jdk1.8.0_65\bin\java.exe" set PATH=C:\Program Files\Java\jdk1.8.0_65\bin;C:\Program Files\Java\jdk1.8.0_65\bin;C:\Program Files\Java\jdk1.8.0_65\ jre\bin;C:\ProgramData\Oracle\Java\javapath;C:\Program Files (x86)\Intel\iCLS Client\;C:\Program Fil es\Intel\iCLS Client\;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\Wi ndowsPowerShell\v1.0\;C:\Program Files\Intel\Intel(R) Management Engine Components\DAL;C:\Program Fi les (x86)\Intel\Intel(R) Management Engine Components\DAL;C:\Program Files\Intel\Intel(R) Management Engine Components\IPT;C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\IPT;c:\Pro gram Files (x86)\Hewlett-Packard\HP Performance Advisor;C:\Program Files\Microsoft\Web Platform Inst aller\;C:\Program Files (x86)\Microsoft ASP.NET\ASP.NET Web Pages\v1.0\;C:\Program Files (x86)\Windo ws Kits\8.0\Windows Performance Toolkit\;C:\Program Files\Microsoft SQL Server\110\Tools\Binn\;C:\Pr ogram Files\IDM Computer Solutions\UltraEdit;C:\Python27;C:\Program Files (x86)\MiKTeX 2.9\miktex\bi n\;C:\Program Files\MATLAB\R2015b\runtime\win64;C:\Program Files\MATLAB\R2015b\bin;C:\Program Files\ IBM\SPSS\Statistics\24\JRE\bin;C:\cygwin64\bin;C:\Program Files (x86)\Skype\Phone\;C:\Program Files (x86)\Google\Chrome\Application;C:\Program Files\Java\jdk1.8.0_65\bin;C:\Program Files\Java\jdk1.8.0 _65\jre\bin;C:\ProgramData\Oracle\Java\javapath;C:\Program Files (x86)\Intel\iCLS Client\;C:\Program Files\Intel\iCLS Client\;C:\windows\system32;C:\windows;C:\windows\System32\Wbem;C:\windows\System3 2\WindowsPowerShell\v1.0\;C:\Program Files\Intel\Intel(R) Management Engine Components\DAL;C:\Progra m Files (x86)\Intel\Intel(R) Management Engine Components\DAL;C:\Program Files\Intel\Intel(R) Manage ment Engine Components\IPT;C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\IPT;c: \Program Files (x86)\Hewlett-Packard\HP Performance Advisor;C:\Program Files\Microsoft\Web Platform Installer\;C:\Program Files (x86)\Microsoft ASP.NET\ASP.NET Web Pages\v1.0\;C:\Program Files (x86)\W indows Kits\8.0\Windows Performance Toolkit\;C:\Program Files\Microsoft SQL Server\110\Tools\Binn\;C :\Program Files\IDM Computer Solutions\UltraEdit;C:\Python27;C:\Users\yi chen\AppData\Local\Programs \Git\cmd;C:\Users\yi chen\AppData\Local\Programs\EmEditor

F:\apache-ctakes-4.0.0>cd F:\apache-ctakes-4.0.0

F:\apache-ctakes-4.0.0>IF "" == "" GOTO NoParam

F:\apache-ctakes-4.0.0>echo Use the GUI to select the AE to load Use the GUI to select the AE to load

F:\apache-ctakes-4.0.0>java -Dctakes.umlsuser= "F:\apache-ctakes-4.0.0\desc\;F:\apache-ctakes-4.0.0\ resources\;F:\apache-ctakes-4.0.0\lib*" -Dlog4j.configuration=file:\F:\apache-ctakes-4.0.0\config\l og4j.xml -Xms512M -Xmx3g org.apache.uima.tools.cvd.CVD 0-cp The system cannot find the file specified.

F:\apache-ctakes-4.0.0>GOTO ChangeBack

谁能帮忙解答一下吗？我真的需要你的帮助。谢谢!

Answer 1

回答这个问题是为了以后遇到这个问题的人。

@jhshi:您在 runCVD.bat 中所做的更改似乎不正确。

文档要求您在每个 bat 文件(或者最亲爱的 Linux 用户的 sh 文件)中添加 UMLS 帐户用户名和密码。这意味着每个 cTAKES 用户都必须创建一个 UMLS 帐户 here .

这是使用 java 命令行参数“-Dctakes.umlsuser”和“-Dctakes.umlspw”完成的。查看下面 runCVD.bat 文件中的 java 调用行。

java -Dctakes.umlsuser="gprakhar" -Dctakes.umlspw="XXXXXXX" -cp "%CTAKES_HOME%\desc\;%CTAKES_HOME%\resources\;%CTAKES_HOME%\lib\*" -Dlog4j.configuration=file:\%CTAKES_HOME%\config\log4j.xml -Xms512M -Xmx2g org.apache.uima.tools.cvd.CVD

您所做的是将某个类似 PATH 的变量的值传递给 umlsuser 命令行参数。