amazon-ec2 - rgdal 不会安装在 AWS RStudio AMI 上

Question

我已成功启动最新的 RStudio AWS EC2 实例(louisaslett.com、RStudio-1.1383_R-3.4.2…ubuntu-16.04-LTS-64)。在这种情况下，R 基本上按预期运行，我可以安装和打开许多包。但是，如果我尝试安装 gdalUtils 包的 rgdal 中的任何一个，我会收到错误消息。

下面是我尝试安装 rgdal 时的控制台输出。 gdalUtils 安装的输出太长，无法包含在此处，但两者都包含文本“错误:将 GDAL 升级到 1.11.4 或更高版本”，我怀疑这是问题所在，但不知道如何更正。任何想法或建议将不胜感激。

干杯

> install.packages("rgdal")
Installing package into ‘/home/rstudio/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/src/contrib/rgdal_1.3-3.tar.gz'
Content type 'application/x-gzip' length 1670656 bytes (1.6 MB)
==================================================
downloaded 1.6 MB
* installing *source* package ‘rgdal’ ...
** package ‘rgdal’ successfully unpacked and MD5 sums checked
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
configure: CC: gcc -std=gnu99
configure: CXX: g++
configure: rgdal: 1.3-3
checking for /usr/bin/svnversion... yes
configure: svn revision: 759
checking whether g++ supports C++11 features by default... no
checking whether g++ supports C++11 features with -std=gnu++11... yes
configure: C++11 support available
checking for gdal-config... /usr/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 1.11.3
checking GDAL version >= 1.11.4... no
configure: error: upgrade GDAL to 1.11.4 or later
ERROR: configuration failed for package ‘rgdal’
* removing ‘/home/rstudio/R/x86_64-pc-linux-gnu-library/3.4/rgdal’
Warning in install.packages :
  installation of package ‘rgdal’ had non-zero exit status
The downloaded source packages are in
        ‘/tmp/RtmpGUxbcA/downloaded_packages’

Answer 1

从那以后，我在谷歌云上运行 Rstudio 时遇到了同样的问题。在这两种情况下，解决方案都相对简单——从 cran ( https://cran.r-project.org/src/contrib/Archive/rgdal/ ) 安装一个最近但较旧的 rgdal 包，它不依赖于最新的 gdal 库，因此安装时不会抛出关于升级 GDAL 的错误。