python-3.x - 在 python 中读取 avro 文件时出错

Question

我在 Python 中成功安装了 Apache Avro。然后我尝试按照以下说明将 Avro 文件读入 Python。

https://avro.apache.org/docs/1.8.1/gettingstartedpython.html

我在一个已经在 Python 中设置为正确路径的目录中有一堆 Avros。这是我的代码:

import avro.schema
from avro.datafile import DataFileReader, DataFileWriter
from avro.io import DatumReader, DatumWriter

reader = DataFileReader(open("part-00000-of-01733.avro", "r"), DatumReader())
for user in reader:
   print (user)
reader.close()

但是它返回这个错误:

Traceback (most recent call last):
  File "I:\DJ data\read avro.py", line 5, in <module>
    reader = DataFileReader(open("part-00000-of-01733.avro", "r"), DatumReader())
  File "I:\Program Files\lib\site-packages\avro_python3-1.8.1-py3.5.egg\avro\datafile.py", line 349, in __init__
    self._read_header()
  File "I:\Program Files\lib\site-packages\avro_python3-1.8.1-py3.5.egg\avro\datafile.py", line 459, in _read_header
    META_SCHEMA, META_SCHEMA, self.raw_decoder)
  File "I:\Program Files\lib\site-packages\avro_python3-1.8.1-py3.5.egg\avro\io.py", line 525, in read_data
    return self.read_record(writer_schema, reader_schema, decoder)
  File "I:\Program Files\lib\site-packages\avro_python3-1.8.1-py3.5.egg \avro\io.py", line 725, in read_record
    field_val = self.read_data(field.type, readers_field.type, decoder)
  File "I:\Program Files\lib\site-packages\avro_python3-1.8.1-py3.5.egg\avro\io.py", line 515, in read_data
    return self.read_fixed(writer_schema, reader_schema, decoder)
  File "I:\Program Files\lib\site-packages\avro_python3-1.8.1-py3.5.egg\avro\io.py", line 568, in read_fixed
    return decoder.read(writer_schema.size)
  File "I:\Program Files\lib\site-packages\avro_python3-1.8.1-py3.5.egg\avro\io.py", line 170, in read
    input_bytes = self.reader.read(n)
  File "I:\Program Files\lib\encodings\cp1252.py", line 23, in decode
    return codecs.charmap_decode(input,self.errors,decoding_table)[0]
UnicodeDecodeError: 'charmap' codec can't decode byte 0x90 in position 863: character maps to <undefined>

我确实知道在说明中的示例中，首先创建了一个模式。但什么是 avsc 文件？在我的案例中，我应该如何创建它和相应的模式？ 理想情况下，我想将 Avro 文件读入 Python 并将其保存为磁盘中的 csv 格式或 Python 中的数据框/列表类型以供进一步分析。我在 Windows 7 上使用 Python 3。 p>

已编辑我尝试了 Stephane 的代码，它返回了一个新错误

Traceback (most recent call last):
  File "I:\DJ data\read avro.py", line 5, in <module>
    reader = DataFileReader(open("part-00000-of-01733.avro", "rb"), DatumReader())
  File "I:\Program Files\lib\site-packages\avro_python3-1.8.1-py3.5.egg\avro\datafile.py", line 352, in __init__
    self.codec = self.GetMeta('avro.codec').decode('utf-8')
AttributeError: 'NoneType' object has no attribute 'decode'

EDITED2:Stephane 的代码在大多数情况下都有效，但有时会像这样引发 AssertionError

Traceback (most recent call last):
File "I:\DJ data\read avro.py", line 42, in <module>
for user in reader:
File "I:\Program Files\lib\site-packages\avro_python3-1.8.1-py3.5.egg\avro\datafile.py", line 522, in __next__
datum = self.datum_reader.read(self.datum_decoder)
File "I:\Program Files\lib\site-packages\avro_python3-1.8.1-py3.5.egg\avro\io.py", line 480, in read
return self.read_data(self.writer_schema, self.reader_schema, decoder)
File "I:\Program Files\lib\site-packages\avro_python3-1.8.1-py3.5.egg\avro\io.py", line 525, in read_data
return self.read_record(writer_schema, reader_schema, decoder)
File "I:\Program Files\lib\site-packages\avro_python3-1.8.1-py3.5.egg\avro\io.py", line 725, in read_record
field_val = self.read_data(field.type, readers_field.type, decoder)
File "I:\Program Files\lib\site-packages\avro_python3-1.8.1-py3.5.egg\avro\io.py", line 523, in read_data
return self.read_union(writer_schema, reader_schema, decoder)
File "I:\Program Files\lib\site-packages\avro_python3-1.8.1-py3.5.egg\avro\io.py", line 689, in read_union
return self.read_data(selected_writer_schema, reader_schema, decoder)
File "I:\Program Files\lib\site-packages\avro_python3-1.8.1-py3.5.egg\avro\io.py", line 493, in read_data
return self.read_data(writer_schema, s, decoder)
File "I:\Program Files\lib\site-packages\avro_python3-1.8.1-py3.5.egg\avro\io.py", line 503, in read_data
return decoder.read_utf8()
File "I:\Program Files\lib\site-packages\avro_python3-1.8.1-py3.5.egg\avro\io.py", line 248, in read_utf8
input_bytes = self.read_bytes()
File "I:\Program Files\lib\site-packages\avro_python3-1.8.1-py3.5.egg\avro\io.py", line 241, in read_bytes
return self.read(nbytes)
File "I:\Program Files\lib\site-packages\avro_python3-1.8.1-py3.5.egg\avro\io.py", line 171, in read
assert (len(input_bytes) == n), input_bytes
AssertionError: b'BlackRock Group\n\n17 December 2015\n\nFORM 8.3\n\nPUBLIC OPENING POSITION DISCLOSURE/DEALING DISCLOSURE BY\n\nA PERSON WITH INTERESTS IN RELEVANT SECURITIES REPRESENTING 1% OR MORE\n\nRule 8.3 of the Takeover Code (the "Code") \n\n\n   1.         KEY INFORMATION \n \n (a) Full name of discloser:                                                                        BlackRock, Inc. \n-------------------------------------------------------------------------------------------------  ----------------- \n (b) Owner or controller of interests and short positions disclosed, if diffe

Answer 1

您正在使用 Windows 和 Python 3。

• 在 Python 3 中，默认 open 以文本模式打开文件。这意味着当进一步的读取操作发生时，Python 将尝试将文件的内容从一些字符集解码为 un​​icode。

• 您没有指定默认字符集，因此 Python 会尝试解码内容，就好像此类内容是使用 charmap 编码的(在 Windows 上默认)。

• 显然您的 avro 文件未在 charmap 中编码，并且解码失败并出现异常

• 据我所知，avro header 无论如何都是二进制内容...不是文本(不确定)。所以也许首先你应该尽量不要用打开的方式解码文件:

reader = DataFileReader(open("part-00000-of-01733.avro", 'rb'), DatumReader())

(注意'rb'，二进制模式)

编辑:对于下一个问题 (AttributeError)，您遇到了 1.8.1 中未修复的已知错误。在下一个版本发布之前，您可以执行以下操作:

import avro.schema
from avro.datafile import DataFileReader, DataFileWriter, VALID_CODECS, SCHEMA_KEY
from avro.io import DatumReader, DatumWriter
from avro import io as avro_io


class MyDataFileReader(DataFileReader):
    def __init__(self, reader, datum_reader):
        """Initializes a new data file reader.

        Args:
          reader: Open file to read from.
          datum_reader: Avro datum reader.
        """
        self._reader = reader
        self._raw_decoder = avro_io.BinaryDecoder(reader)
        self._datum_decoder = None  # Maybe reset at every block.
        self._datum_reader = datum_reader

        # read the header: magic, meta, sync
        self._read_header()

        # ensure codec is valid
        avro_codec_raw = self.GetMeta('avro.codec')
        if avro_codec_raw is None:
            self.codec = "null"
        else:
            self.codec = avro_codec_raw.decode('utf-8')
        if self.codec not in VALID_CODECS:
            raise DataFileException('Unknown codec: %s.' % self.codec)

        self._file_length = self._GetInputFileLength()

        # get ready to read
        self._block_count = 0
        self.datum_reader.writer_schema = (
            schema.Parse(self.GetMeta(SCHEMA_KEY).decode('utf-8')))


reader = MyDataFileReader(open("part-00000-of-01733.avro", "r"), DatumReader())
for user in reader:
    print (user)
reader.close()

虽然如此愚蠢的错误会出现在发布中，但这是非常奇怪的，这并不是代码成熟的标志!