python - 如何修复pyspark中的 'Container exited with a non-zero exit code 143'错误

Question

我使用以下代码计算数据帧所有行之间的余弦相似度:

from pyspark.ml.feature import Normalizer
from pyspark.mllib.linalg.distributed import IndexedRow, IndexedRowMatrix

normalizer = Normalizer(inputCol="features", outputCol="norm")
data = normalizer.transform(transformed_df)
data = index_df(data)

mat = IndexedRowMatrix(
    data.select("id", "norm")\
        .rdd.map(lambda row: IndexedRow(row.id, row.norm.toArray()))).toBlockMatrix()
dot = mat.multiply(mat.transpose())

indexed_dot = dot.toIndexedRowMatrix()
indexed_rdd = indexed_dot.rows

df = indexed_rdd.toDF()

当我使用数据帧的子集(100k 行)时，它可以工作，但当我尝试使用更多行(我的目标是 300k 行)时，我会收到下面的错误。

----> 1 df.write.mode('overwrite').parquet('some_path')

/usr/lib/spark/python/pyspark/sql/readwriter.py in parquet(self, path, mode, partitionBy, compression)
    802             self.partitionBy(partitionBy)
    803         self._set_opts(compression=compression)
--> 804         self._jwrite.parquet(path)
    805 
    806     @since(1.6)

/usr/lib/spark/python/lib/py4j-0.10.7-src.zip/py4j/java_gateway.py in __call__(self, *args)
   1255         answer = self.gateway_client.send_command(command)
   1256         return_value = get_return_value(
-> 1257             answer, self.gateway_client, self.target_id, self.name)
   1258 
   1259         for temp_arg in temp_args:

/usr/lib/spark/python/pyspark/sql/utils.py in deco(*a, **kw)
     61     def deco(*a, **kw):
     62         try:
---> 63             return f(*a, **kw)
     64         except py4j.protocol.Py4JJavaError as e:
     65             s = e.java_exception.toString()

/usr/lib/spark/python/lib/py4j-0.10.7-src.zip/py4j/protocol.py in get_return_value(answer, gateway_client, target_id, name)
    326                 raise Py4JJavaError(
    327                     "An error occurred while calling {0}{1}{2}.\n".
--> 328                     format(target_id, ".", name), value)
    329             else:
    330                 raise Py4JError(

Py4JJavaError: An error occurred while calling o303.parquet.
: org.apache.spark.SparkException: Job aborted.
    at org.apache.spark.sql.execution.datasources.FileFormatWriter$.write(FileFormatWriter.scala:224)
    at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationCommand.run(InsertIntoHadoopFsRelationCommand.scala:154)
    at org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult$lzycompute(commands.scala:104)
    at org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult(commands.scala:102)
    at org.apache.spark.sql.execution.command.DataWritingCommandExec.doExecute(commands.scala:122)
    at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:131)
    at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:127)
    at org.apache.spark.sql.execution.SparkPlan$$anonfun$executeQuery$1.apply(SparkPlan.scala:155)
    at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
    at org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:152)
    at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:127)
    at org.apache.spark.sql.execution.QueryExecution.toRdd$lzycompute(QueryExecution.scala:80)
    at org.apache.spark.sql.execution.QueryExecution.toRdd(QueryExecution.scala:80)
    at org.apache.spark.sql.DataFrameWriter$$anonfun$runCommand$1.apply(DataFrameWriter.scala:656)
    at org.apache.spark.sql.DataFrameWriter$$anonfun$runCommand$1.apply(DataFrameWriter.scala:656)
    at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:77)
    at org.apache.spark.sql.DataFrameWriter.runCommand(DataFrameWriter.scala:656)
    at org.apache.spark.sql.DataFrameWriter.saveToV1Source(DataFrameWriter.scala:273)
    at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:267)
    at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:225)
    at org.apache.spark.sql.DataFrameWriter.parquet(DataFrameWriter.scala:549)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
    at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
    at py4j.Gateway.invoke(Gateway.java:282)
    at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
    at py4j.commands.CallCommand.execute(CallCommand.java:79)
    at py4j.GatewayConnection.run(GatewayConnection.java:238)
    at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.spark.SparkException: Job aborted due to stage failure: Task 3 in stage 62.0 failed 4 times, most recent failure: Lost task 3.3 in stage 62.0 (TID 1892, blabla-worker, executor 77): ExecutorLostFailure (executor 77 exited caused by one of the running tasks) Reason: Container marked as failed: container_1557859612139_0001_01_000086 on host: blabla-worker Exit status: 143. Diagnostics: [2019-05-14 19:19:23.665]Container killed on request. Exit code is 143
[2019-05-14 19:19:23.665]Container exited with a non-zero exit code 143. 
[2019-05-14 19:19:23.665]Killed by external signal

Driver stacktrace:
    at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1661)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1649)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1648)
    at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
    at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
    at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1648)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:831)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:831)
    at scala.Option.foreach(Option.scala:257)
    at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:831)
    at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1882)
    at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1831)
    at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1820)
    at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
    at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:642)
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:2034)
    at org.apache.spark.sql.execution.datasources.FileFormatWriter$.write(FileFormatWriter.scala:194)
    ... 31 more

任务似乎卡在某个特定级别并多次失败，因此经理将其终止。

你知道我该如何解决这个问题吗？

Answer 1

使用yarn logs -applicationId <applicationId> -containerId <containerId>调查日志后，问题似乎来自于一项不断失败的任务。 Spark实现容错，任务重复，导致我的worker磁盘空间不足(90%以上)。节点变得不健康，作业最终失败。

任务失败的原因仍然是个谜。如果我发现那里发生了什么，我会更新。