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python - 无法在 CentOS 7 上安装 mpi4py

转载 作者:塔克拉玛干 更新时间:2023-11-02 23:26:51 25 4
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我有 CentOS 7 并且我已经安装了 mpicc(它可以在 C 中为 openmpi 工作和编译)。我也有 python 2.7.5 并且刚刚安装了 pip。我正在运行此命令并收到以下错误:

sudo pip install mpi4py

Collecting mpi4py Using cached mpi4py-2.0.0.tar.gz Installing
> collected packages: mpi4py Running setup.py install for mpi4py ...
> error
> Complete output from command /usr/bin/python2 -u -c "import setuptools,
> tokenize;__file__='/tmp/pip-build-x5jD4O/mpi4py/setup.py';exec(compile(getattr(tokenize,
> 'open', open)(__file__).read().replace('\r\n', '\n'), __file__,
> 'exec'))" install --record /tmp/pip-mpMoZO-record/install-record.txt
> --single-version-externally-managed --compile:
> running install
> running build
> running build_src
> running build_py
> creating build
> creating build/lib.linux-x86_64-2.7
> creating build/lib.linux-x86_64-2.7/mpi4py
> copying src/__main__.py -> build/lib.linux-x86_64-2.7/mpi4py
> copying src/__init__.py -> build/lib.linux-x86_64-2.7/mpi4py
> creating build/lib.linux-x86_64-2.7/mpi4py/include
> creating build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py
> copying src/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py
> copying src/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py
> copying src/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py
> copying src/include/mpi4py/__init__.pxd -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py
> copying src/include/mpi4py/libmpi.pxd -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py
> copying src/include/mpi4py/MPI.pxd -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py
> copying src/include/mpi4py/__init__.pyx -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py
> copying src/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py
> copying src/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py
> copying src/MPI.pxd -> build/lib.linux-x86_64-2.7/mpi4py
> copying src/libmpi.pxd -> build/lib.linux-x86_64-2.7/mpi4py
> running build_clib
> MPI configuration: [mpi] from 'mpi.cfg'
> checking for library 'lmpe' ...
> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c _configtest.c -o _configtest.o
> gcc -pthread _configtest.o -llmpe -o _configtest
> /bin/ld: cannot find -llmpe
> collect2: error: ld returned 1 exit status
> failure.
> removing: _configtest.c _configtest.o
> building 'mpe' dylib library
> creating build/temp.linux-x86_64-2.7
> creating build/temp.linux-x86_64-2.7/src
> creating build/temp.linux-x86_64-2.7/src/lib-pmpi
> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-x86_64-2.7/src/lib-pmpi/mpe.o
> creating build/lib.linux-x86_64-2.7/mpi4py/lib-pmpi
> gcc -pthread -shared -Wl,-z,relro build/temp.linux-x86_64-2.7/src/lib-pmpi/mpe.o -o
> build/lib.linux-x86_64-2.7/mpi4py/lib-pmpi/libmpe.so
> checking for library 'vt-mpi' ...
> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c _configtest.c -o _configtest.o
> gcc -pthread _configtest.o -lvt-mpi -o _configtest
> /bin/ld: cannot find -lvt-mpi
> collect2: error: ld returned 1 exit status
> failure.
> removing: _configtest.c _configtest.o
> checking for library 'vt.mpi' ...
> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c _configtest.c -o _configtest.o
> gcc -pthread _configtest.o -lvt.mpi -o _configtest
> /bin/ld: cannot find -lvt.mpi
> collect2: error: ld returned 1 exit status
> failure.
> removing: _configtest.c _configtest.o
> building 'vt' dylib library
> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-x86_64-2.7/src/lib-pmpi/vt.o
> gcc -pthread -shared -Wl,-z,relro build/temp.linux-x86_64-2.7/src/lib-pmpi/vt.o -o
> build/lib.linux-x86_64-2.7/mpi4py/lib-pmpi/libvt.so
> checking for library 'vt-mpi' ...
> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c _configtest.c -o _configtest.o
> gcc -pthread _configtest.o -lvt-mpi -o _configtest
> /bin/ld: cannot find -lvt-mpi
> collect2: error: ld returned 1 exit status
> failure.
> removing: _configtest.c _configtest.o
> checking for library 'vt.mpi' ...
> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c _configtest.c -o _configtest.o
> gcc -pthread _configtest.o -lvt.mpi -o _configtest
> /bin/ld: cannot find -lvt.mpi
> collect2: error: ld returned 1 exit status
> failure.
> removing: _configtest.c _configtest.o
> building 'vt-mpi' dylib library
> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-x86_64-2.7/src/lib-pmpi/vt-mpi.o
> gcc -pthread -shared -Wl,-z,relro build/temp.linux-x86_64-2.7/src/lib-pmpi/vt-mpi.o -o
> build/lib.linux-x86_64-2.7/mpi4py/lib-pmpi/libvt-mpi.so
> checking for library 'vt-hyb' ...
> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c _configtest.c -o _configtest.o
> gcc -pthread _configtest.o -lvt-hyb -o _configtest
> /bin/ld: cannot find -lvt-hyb
> collect2: error: ld returned 1 exit status
> failure.
> removing: _configtest.c _configtest.o
> checking for library 'vt.ompi' ...
> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c _configtest.c -o _configtest.o
> gcc -pthread _configtest.o -lvt.ompi -o _configtest
> /bin/ld: cannot find -lvt.ompi
> collect2: error: ld returned 1 exit status
> failure.
> removing: _configtest.c _configtest.o
> building 'vt-hyb' dylib library
> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-x86_64-2.7/src/lib-pmpi/vt-hyb.o
> gcc -pthread -shared -Wl,-z,relro build/temp.linux-x86_64-2.7/src/lib-pmpi/vt-hyb.o -o
> build/lib.linux-x86_64-2.7/mpi4py/lib-pmpi/libvt-hyb.so
> running build_ext
> MPI configuration: [mpi] from 'mpi.cfg'
> checking for MPI compile and link ...
> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -I/usr/include/python2.7 -c _configtest.c -o _configtest.o
> _configtest.c:2:17: fatal error: mpi.h: No such file or directory
> #include <mpi.h>
> ^
> compilation terminated.
> failure.
> removing: _configtest.c _configtest.o
> error: Cannot compile MPI programs. Check your configuration!!!

到目前为止,我尝试了所有找到的解决方案,但似乎都没有用,请问有人对这个问题有任何想法吗?谢谢

最佳答案

遇到同样的问题并解决了:

yum install openmpi-devel
export CC=/usr/lib64/openmpi/bin/mpicc
pip install mpi4py

关于python - 无法在 CentOS 7 上安装 mpi4py,我们在Stack Overflow上找到一个类似的问题: https://stackoverflow.com/questions/41446426/

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